当前共找到 1194 篇文献分享,本页显示第 101 - 120 篇。
101.
符毓 Yu
(2024-11-30 20:46):
#paper doi.org/10.48550/arXiv.2411.18454, 2024, Optimizing Coverage in Convex Quadrilateral Regions with a Single UAV. 本文研究了单个无人机的最佳悬停高度,以提供对地面上任何凸四边形区域的覆盖。无人机采用了一个定向天线与倾斜波束,产生一个椭圆形的覆盖模式。考虑两种情况:(1)在四边形内内接最大的椭圆以覆盖其内部,以及(2)围绕四边形外接最小的椭圆以确保完全覆盖。我们推导出最佳的无人机高度和天线倾斜条件下,在这两种情况下的简化但广泛接受的路径损耗模型和覆盖效率的数值结果。这项工作有助于开发节能的无人机通信系统。
arXiv,
2024-11-27T15:45:31Z.
DOI: 10.48550/arXiv.2411.18454
Abstract:
This letter investigates the optimal hovering altitude of a single UAV toprovide coverage over any convex quadrilateral region on the ground. The UAVemploys a directional antenna with a tiltable beam, …
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This letter investigates the optimal hovering altitude of a single UAV toprovide coverage over any convex quadrilateral region on the ground. The UAVemploys a directional antenna with a tiltable beam, producing an ellipticalcoverage pattern. Two scenarios are considered: (1) inscribing the largestellipse within the quadrilateral to cover its interior, and (2) circumscribingthe smallest ellipse about the quadrilateral to ensure full coverage. We derivethe optimal UAV altitude and antenna tilt conditions in both scenarios for asimplified yet widely accepted path loss model and present numerical resultsfor coverage efficiency. The work contributes to the development ofenergy-efficient UAV-based communication systems.
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102.
白鸟
(2024-11-30 20:32):
#paper doi: 10.1101/2024.01.11.575135 Comparative analysis of multiplexed in situ gene expression profiling technologies. bioRxiv.2024.
Satija团队利用seurat分析不同技术平台的小鼠大脑空间数据,构建基准分析,也可间接评价不同技术平台的优劣。
跨平台基准测试,重要指标是每个细胞的分子数量。我们可以用 “空间捕获越多越好 ”来衡量,但实际上,这些指标不同技术差异较大,也很难解释清楚差异。
原因主要有两个:一是原位数据本身的差异,二是不同技术公司使用的标记panel非常不同。Satija团队尝试只比较两种技术之间的共享基因,但还是存在问题。如星形胶质细胞标记与神经元细胞标记是相斥的,它们不应该在同一个细胞内被检测到。单细胞转录组的数据也显示,两类型的marker是互斥的,不存在共表达。但在原位数据中,互斥marker存在不同程度的共表达。原因在于不同技术的细胞分割方法,细胞边界更大的区域会捕获更多的分子。如果细胞分割算法不统一,我们无法比较两个数据集的分子计数,这是不对等的评价。
原位空间基准测试,我们不能仅从作者提供的输出结果进行评判,我们需要制定衡量标准和分割流程来控制这种现象,比较不同技术的灵敏度。
bioRxiv,
2024-1-24.
DOI: 10.1101/2024.01.11.575135
Abstract:
AbstractThe burgeoning interest in in situ multiplexed gene expression profiling technologies has opened new avenues for understanding cellular behavior and interactions. In this study, we present a comparative benchmark analysis …
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AbstractThe burgeoning interest in in situ multiplexed gene expression profiling technologies has opened new avenues for understanding cellular behavior and interactions. In this study, we present a comparative benchmark analysis of six in situ gene expression profiling methods, including both commercially available and academically developed methods, using publicly accessible mouse brain datasets. We find that standard sensitivity metrics, such as the number of unique molecules detected per cell, are not directly comparable across datasets due to substantial differences in the incidence of off-target molecular artifacts impacting specificity. To address these challenges, we explored various potential sources of molecular artifacts, developed novel metrics to control for them, and utilized these metrics to evaluate and compare different in situ technologies. Finally, we demonstrate how molecular false positives can seriously confound spatially-aware differential expression analysis, requiring caution in the interpretation of downstream results. Our analysis provides guidance for the selection, processing, and interpretation of in situ spatial technologies.
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103.
徐炳祥
(2024-11-30 19:58):
#paper doi: 10.1016/j.jshs.2024.100992 Journal of Sport and Health Science, 2024, GEPREP: A comprehensive data atlas of RNA-seq-based gene expression profiles of exercise responses。众所周知,不同形式的运动对不同组织器官的效应是不同的,运动对转录图谱的塑造是解析这些效应的重要基础。现在虽已有了大量运动相关的转录组研究、尤其是基于RNA测序的研究,然而他们远未被充分利用和汇编,尤其是其中包含的丰富的元数据。为此,本文收集整理了文献中已有的涉及人类和小鼠的多组织器官的逾2000份由RNA-seq测定的基因表达谱,对其31项样本元信息进行了细致整理。并汇集成了迄今为止规模最大,涵盖物种/组织类型/运动干预类型最全面,元数据最丰富的运动转录组数据库。本文是我作为体育老师主导的第一项体育相关研究,以期为缺乏生物信息基础的体育研究者提供方便的平台和资源。
104.
小年
(2024-11-30 19:16):
#paper doi: 10.1016/j.xcrm.2024.101762. A simplified and robust risk stratification model for stem cell transplantation in pediatric acute myeloid leukemia. 2024 Oct 15;5(10):101762..该项研究纳入了来自多个临床医学研究中心共540例在CR1阶段接受SCT的pAML患者,最终阐明了与SCT生存率高度相关的3个因素,即年龄,KMT2A重排(KMT2A-rearrangement)和微小残留病(minimal residual disease at end of course 1, MRD1),基于上述三个因素构建的pAML SCT Model能有效区分患者的预后风险。值得注意的是,该模型只纳入了3个临床常用的因子,且预测性能在不同人种、不同移植物来源以及不同捐献者中均得到了认证,提示模型在各种临床环境的广泛适用性。为 CR1 期 pAML 患者的 SCT 开发了一种简化且稳健的风险分层模型。该模型独立于细胞分子风险分层,可对不同人群、移植物来源和供体类型提供可靠的预测。结合 FLT3/ITD 等位基因比率可增强其选择合适候选药物的能力。
105.
庞庞
(2024-11-30 16:27):
#paper doi:10.1038/s41467-024-44863-6
Structural connectome architecture shapes the maturation of cortical morphology from childhood to adolescence
文章探究了发育时期皮层的改变情况,主要在前额叶和顶叶发生改变。同时,发现皮层变薄是被白质网络结构约束的,约束的力度在不同大脑节点具有异质性,并且具有不同的基因机制。
Nature Communications,
2024-1-26.
DOI: 10.1038/s41467-024-44863-6
Abstract:
AbstractCortical thinning is an important hallmark of the maturation of brain morphology during childhood and adolescence. However, the connectome-based wiring mechanism that underlies cortical maturation remains unclear. Here, we show …
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AbstractCortical thinning is an important hallmark of the maturation of brain morphology during childhood and adolescence. However, the connectome-based wiring mechanism that underlies cortical maturation remains unclear. Here, we show cortical thinning patterns primarily located in the lateral frontal and parietal heteromodal nodes during childhood and adolescence, which are structurally constrained by white matter network architecture and are particularly represented using a network-based diffusion model. Furthermore, connectome-based constraints are regionally heterogeneous, with the largest constraints residing in frontoparietal nodes, and are associated with gene expression signatures of microstructural neurodevelopmental events. These results are highly reproducible in another independent dataset. These findings advance our understanding of network-level mechanisms and the associated genetic basis that underlies the maturational process of cortical morphology during childhood and adolescence.
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106.
惊鸿
(2024-11-28 15:55):
#paper 《'We need to be ready for a new world': scientists globally react to Trump election win》(DOI: 10.1038/d41586-024-03635-4)
这篇文章揭示了全球科学家对特朗普再次当选美国总统的深切担忧。科学家们担心,特朗普政府可能会对科学领域采取敌对态度,这不仅会限制科研自由,还可能阻碍科学进步和创新。这种紧张关系可能会加剧,尤其是在一个对科学持怀疑态度的政府领导下。特朗普的当选增加了未来四年科学政策的不确定性,可能会导致科研资金的减少和科研优先事项的改变。这不仅是美国国内的问题,也关系到全球科学界,因为美国的科研政策和资金分配对全球科学发展有着深远的影响。
文章中提到的科学家们的担忧强调了科学传播的重要性,以及科学家需要更加努力地与公众沟通,以确保科学的声音被听到,并在政策制定中发挥作用。面对可能的挑战,科学家们需要承担起社会责任,不仅要在实验室里工作,还要积极参与公共讨论,捍卫科学的尊严和价值。这也提醒我们,科学不仅是实验室里的工作,它与社会、政治和经济紧密相连,需要我们共同维护和支持。
Nature,
2024-11-14.
DOI: 10.1038/d41586-024-03635-4
Abstract:
No abstract available.
107.
李翛然
(2024-11-28 11:23):
#paper Extraction of bioactive compounds from plant materials using combination of various novel methods: A review doi:https://doi.org/10.1016/j.tifs.2021.11.019
这文章不错,比较好的整理了植物提取物的方法,很适合化妆品市场。提取技术:
提取技术的选择对提取效率至关重要,影响因素包括提取技术、植物成分矩阵属性、提取溶剂、温度、压力和时间。
传统提取技术(如索氏提取、浸泡、水蒸气蒸馏等)与新颖技术(如超声辅助提取、脉冲电场辅助提取、超临界流体提取等)的比较。
新颖提取技术:
新颖技术因其环境友好性、操作时间短、提取效率高和质量改善而受到关注。
超声波辅助提取(UAE)、脉冲电场提取(PEF)、酶辅助提取(EAE)、微波辅助提取(MAE)、超临界流体提取(SFE)等技术的应用和优势。
组合提取技术:
结合使用不同的提取技术可以提高提取效率和选择性,例如超声-微波辅助提取(UMAE)、酶-超声-微波辅助提取(EUMAE)等。
这些组合技术可以更有效地从植物材料中提取生物活性化合物。
结论:
新颖提取技术能够在更短的时间内获得更大的提取产量、更好的产品质量,并减少环境问题。
越来越多的研究关注这些创新提取方法的组合使用,这些方法具有快速、方便和安全的优势。
文章强调了在提取植物材料中的生物活性化合物时,选择合适提取技术的重要性,并比较了不同方法的优缺点。同时,文章也指出了这些新颖提取技术在实际应用中仍需进一步开发和优化。
Abstract:
No abstract available.
108.
刘昊辰
(2024-11-21 16:22):
#paper The *-Minimax Search Procedure for Trees Containing Chance Nodes. 这是一篇关于树搜索模型的研究论文。论文开发了一种将 alpha - beta 树剪枝策略扩展到包含 “概率” 节点(* 节点)的游戏树的方法,节点的值定义为其后续节点值的(可能加权的)平均值,这些树被称为 “ - minimax” 树,适用于涉及机会但无隐藏信息的游戏。基于搜索策略,重新制定并分析了几种用于 * - minimax 树的算法。首先开发了一种从左到右的深度优先算法,该算法可将穷举搜索策略的复杂度降低 25 - 30%。然后制定了一种改进算法,用于 “探测”“常规”* - minimax 树的机会节点下方,在这种树中玩家交替移动且机会事件穿插其中。在后继节点随机排序的情况下,该改进算法可减少超过 50% 的搜索量,在最优排序下,可将搜索复杂度降低一个数量级。在研究了前两种算法在更深层次树中的节省情况后,又提出并分析了另外两种算法。下载地址:https://www.cs.uleth.ca/~benkoczi/3750/data/ballard83-star_alpha_beta.pdf
Artificial Intelligence,
1983.
Abstract:
No abstract available.
109.
颜林林
(2024-11-15 23:02):
#paper doi:10.1101/2024.01.18.24301478, medRxiv, Connecting genomic results for psychiatric disorders to human brain cell types and regions reveals convergence with functional connectivity. 这是今年1月在medRxiv发出的文章(至今尚未正式发表),来自瑞典卡罗林斯卡学院。关于精神疾病的研究,核磁主要探讨表型或功能相关脑区的定位,基因组学通过大规模人群基因检测和GWAS定位基因和突变,但两者之间尚未能直接联系。现有的人脑单细胞测序数据主要来自健康受试者,虽然能够将脑区与分子机制联系起来,但缺乏疾病相关数据。本研究通过一系列方法(如TDEP和S-LDSC),将GWAS数据与人类单核转录组数据关联,将精神疾病等表型与特定脑区及特定细胞类型联系起来。此外,研究使用fMRI数据对关键脑区(如海马体、杏仁核和前额皮层)的功能连接特性进行了验证,结果支持遗传学和转录组学发现的脑区定位。这一整合方法为理解精神疾病的多基因机制及其大脑定位提供了新的可能性。
medRxiv,
2024-1-20.
DOI: 10.1101/2024.01.18.24301478
Abstract:
AbstractUnderstanding the temporal and spatial brain locations etiological for psychiatric disorders is essential for targeted neurobiological research. Integration of genomic insights from genome-wide association studies with single-cell transcriptomics is a …
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AbstractUnderstanding the temporal and spatial brain locations etiological for psychiatric disorders is essential for targeted neurobiological research. Integration of genomic insights from genome-wide association studies with single-cell transcriptomics is a powerful approach although past efforts have necessarily relied on mouse atlases. Leveraging a comprehensive atlas of the adult human brain, we prioritized cell types via the enrichment of SNP-heritabilities for brain diseases, disorders, and traits, progressing from individual cell types to brain regions. Our findings highlight specific neuronal clusters significantly enriched for the SNP-heritabilities for schizophrenia, bipolar disorder, and major depressive disorder along with intelligence, education, and neuroticism. Extrapolation of cell-type results to brain regions reveals important patterns for schizophrenia with distinct subregions in the hippocampus and amygdala exhibiting the highest significance. Cerebral cortical regions display similar enrichments despite the known prefrontal dysfunction in those with schizophrenia highlighting the importance of subcortical connectivity. Using functional MRI connectivity from cases with schizophrenia and neurotypical controls, we identified brain networks that distinguished cases from controls that also confirmed involvement of the central and lateral amygdala, hippocampal body, and prefrontal cortex. Our findings underscore the value of single-cell transcriptomics in decoding the polygenicity of psychiatric disorders and offer a promising convergence of genomic, transcriptomic, and brain imaging modalities toward common biological targets.
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<jats:title>摘要</jats:title><jats:p>了解精神疾病病因的大脑时间和空间位置对于有针对性的神经生物学研究至关重要。将来自全基因组关联研究的基因组见解与单细胞转录组学相结合是一种强大的方法,尽管过去的工作必然依赖于小鼠图谱。利用成人大脑的综合图谱,我们通过富集脑部疾病、障碍和性状的 SNP 遗传性来确定细胞类型的优先级,从单个细胞类型发展到大脑区域。我们的研究结果强调了特定神经元簇显着富集精神分裂症、双相情感障碍和重度抑郁症的 SNP 遗传性以及智力、教育和神经质。将细胞类型结果外推到大脑区域揭示了精神分裂症的重要模式,其中海马体和杏仁核中不同的亚区域表现出最高意义。尽管精神分裂症患者存在已知的前额叶功能障碍,但大脑皮层区域表现出类似的丰富,这突出了皮层下连接的重要性。使用来自精神分裂症病例和神经典型对照的功能性 MRI 连接,我们确定了将病例与对照组区分开来的大脑网络,这些病例也证实了中央和外侧杏仁核、海马体和前额叶皮层的参与。我们的研究结果强调了单细胞转录组学在解码精神疾病多基因性方面的价值,并为基因组、转录组和脑成像模式向共同的生物学靶标提供了有希望的融合。</jats:p>
110.
龙海晨
(2024-11-07 13:24):
#paper Galea GL, Paradise CR, Meakin LB, Camilleri ET, Taipaleenmaki H, Stein GS, Lanyon LE, Price JS, van Wijnen AJ, Dudakovic A. Mechanical strain-mediated reduction in RANKL expression is associated with RUNX2 and BRD2. Gene. 2020 Dec;763S:100027. doi: 10.1016/j.gene.2020.100027. Epub 2020 Jan 16. PMID: 34493364.这是一篇研究机械应变与成骨活动的文章。机械负荷相关的应变触发成骨细胞形成骨,同时抑制破骨细胞的骨吸收,从而开启骨形成和骨吸收的过程。骨细胞可能通过分泌硬化素(SOST)(抑制成骨细胞)和表达核因子-κB配体受体激活剂。(RANKL/TNFSF11)来生成破骨细胞协调这一过程。机械应变会降低 SOST 和 RANKL 表达。RUNX2 敲低会增加 SOST 水平。
RUNX2 促进机械应变介导的 RANKL 抑制。BRD2 表达受机械应变和 RUNX2 调节。
Gene,
2020-12.
DOI: 10.1016/j.gene.2020.100027
机械菌株介导的 RANKL 表达降低与 RUNX2 和 BRD2 相关
Abstract:
No abstract available.
111.
DeDe宝
(2024-11-02 15:29):
#paper:doi: doi/10.1126/sciadv.ado4103 Noninvasive modulation of the hippocampal-entorhinal complex during spatial navigation in humans.本研究利用经颅时间干扰电刺激(tTIS)技术,非侵入性地调节人脑海马-内嗅皮层复合体(HC-EC)活动,以研究其在空间导航中的作用。通过在虚拟现实空间导航任务中应用连续(cTBS)和间歇(iTBS)theta-burst刺激模式,与控制条件相比较,研究发现iTBS提高了空间导航性能,与海马活动增加和内嗅皮层网格细胞样活动减少相关。这些结果表明,通过非侵入性手段可以直接调节HC-EC活动,改变空间导航行为,为认知障碍患者提供了潜在的治疗策略。
Science Advances,
2024-11.
DOI: 10.1126/sciadv.ado4103
Abstract:
Because of the depth of the hippocampal-entorhinal complex (HC-EC) in the brain, understanding of its role in spatial navigation via neuromodulation was limited in humans. Here, we aimed to better …
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Because of the depth of the hippocampal-entorhinal complex (HC-EC) in the brain, understanding of its role in spatial navigation via neuromodulation was limited in humans. Here, we aimed to better elucidate this relationship in healthy volunteers, using transcranial temporal interference electric stimulation (tTIS), a noninvasive technique allowing to selectively neuromodulate deep brain structures. We applied tTIS to the right HC-EC in either continuous or intermittent theta-burst stimulation patterns (cTBS or iTBS), compared to a control condition, during a virtual reality–based spatial navigation task and concomitant functional magnetic resonance imaging. iTBS improved spatial navigation performance, correlated with hippocampal activity modulation, and decreased grid cell–like activity in EC. Collectively, these data provide the evidence that human HC-EC activity can be directly and noninvasively modulated leading to changes of spatial navigation behavior. These findings suggest promising perspectives for patients suffering from cognitive impairment such as following traumatic brain injury or dementia.
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112.
muton
(2024-10-31 23:48):
#paper:doi: https://doi.org/10.1101/2022.08.29.505742 Parallel cognitive maps for short-term statistical and long-term semantic relationships in the hippocampal formation 海马-内嗅皮层不仅加工空间信息,同时也加工其它类型的信息,如关系信息(社交信息)等。但是海马到底是把刺激的不同维度整合到一个联合地图中还是每个信息纬度都是一个平行地图?作者重新分析了之前Garvert等的核磁数据,实验任务可以构建出一个包含语义信息和统计规律的地图,作者通过计算模型,mds等方法计算证明了海马中是形成了多个地图的,并不是将多个结构整合到一个地图中。
bioRxiv,
2022-8-29.
DOI: 10.1101/2022.08.29.505742
Abstract:
AbstractThe hippocampal-entorhinal system uses cognitive maps to represent spatial knowledge and other types of relational information, such as the transition probabilities between objects. However, objects can often be characterized in …
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AbstractThe hippocampal-entorhinal system uses cognitive maps to represent spatial knowledge and other types of relational information, such as the transition probabilities between objects. However, objects can often be characterized in terms of different types of relations simultaneously, e.g. semantic similarities learned over the course of a lifetime as well as transitions experienced over a brief timeframe in an experimental setting. Here we ask how the hippocampal formation handles the embedding of stimuli in multiple relational structures that differ vastly in terms of their mode and timescale of acquisition: Does it integrate the different stimulus dimensions into one conjunctive map, or is each dimension represented in a parallel map? To this end, we reanalyzed functional magnetic resonance imaging (fMRI) data from Garvert et al. (2017) that had previously revealed an entorhinal map which coded for newly learnt statistical regularities. We used a triplet odd-one-out task to construct a semantic distance matrix for presented items and applied fMRI adaptation analysis to show that the degree of similarity of representations in bilateral hippocampus decreases as a function of semantic distance between presented objects. Importantly, while both maps localize to the hippocampal formation, this semantic map is anatomically distinct from the originally described entorhinal map. This finding supports the idea that the hippocampal-entorhinal system forms parallel cognitive maps reflecting the embedding of objects in diverse relational structures.
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113.
白鸟
(2024-10-31 23:04):
#paper DOI: 10.1038/nmeth.3364,MiXCR: software for comprehensive adaptive immunity profiling. 2015年,milaboratory推出了MiXCR软件,MiXCR是二代测序TCR/BCR免疫组库分析软件,能有效处理双端和单端测序,考虑序列质量,纠正PCR错误并识别种系超突变。
(1)MiXCR比对:将测序读数与T细胞或B细胞受体的V、D、J 和 C基因进行比对;
(2)MiXCR组装:利用上一步获得的比对结果组装成克隆型(以提取特定基因区域,如 CDR3);
(3)结果导出和绘图:将比对结果或克隆型结果导出和绘图;
MiXCR软件分学术版本和商业版本,软件封装得很好,几乎为所有商业/通用试剂盒开发了定制预配置的分析流程,单命令即可完成操作。
114.
半面阳光
(2024-10-31 17:55):
#paper DOI: 10.1097/GRF.0000000000000804, Clin Obstet Gynecol, 2023, Unique Challenges of NIPT for Sex Chromosome Aneuploidy. 这是一篇综述文章。作者主要围绕NIPT检测性染色体异常时存在的三个难点进行了总结梳理。一是性染色体异常的表型类型较多,二是性染色体异常存在较多的嵌合情况,三是NIPT检测性染色体异常的阳性预测值(PPV)比较低,尤其是跟其他常染色体比较而言。除了这三个检测中的难点之外,作者还探讨了在检测前以及检出性染色体高风险之后,如何进行遗传咨询等内容。性染色体异常的检测是NIPT检测在临床应用中的一个重要方面,同时也是问题较多、情况比较复杂的一个领域。这篇文章的主题很具实际应用性。
Abstract:
Noninvasive prenatal testing (NIPT) for the sex chromosome aneuploidies (45,X, 47,XXY, 47,XXX, and 47,XYY) differs significantly from that for the autosomal aneuploidies (trisomy 13, 18, and 21). As a group, …
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Noninvasive prenatal testing (NIPT) for the sex chromosome aneuploidies (45,X, 47,XXY, 47,XXX, and 47,XYY) differs significantly from that for the autosomal aneuploidies (trisomy 13, 18, and 21). As a group, sex chromosome aneuploidies occur more commonly (1/400) than any one isolated autosomal aneuploidy, the phenotypic variation is greater, the role of mosaicism more challenging, and the positive predictive value of a high-risk NIPT result is substantially lower. These considerations should be identified during pretest counseling, the inclusion of sex chromosome testing offered separately, and the differences from autosomal aneuploidy NIPT clearly delineated.
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115.
庞庞
(2024-10-31 17:06):
#paper https://doi.org/10.1038/s44220-024-00309-y A mega-analysis of functional connectivity and network abnormalities in youth depression 这篇文章思路很简单,就是整合了青少年抑郁症的功能影像数据,然后和正常人进行了比较,确定了异常的功能连接,相关的功能网络。然后发现这些功能连接多分布在hub节点,同时与临床症状有关系。值得学习的是这篇文章的写作,非常流畅,而且详略得当。
116.
前进
(2024-10-31 15:09):
#paper arXiv:2408.05839v2 Deep Learning in Medical Image Registration: Magic or Mirage? 38th Conference on Neural Information Processing Systems (NeurIPS 2024)
这篇论文深入探讨了医学图像配准领域中,基于深度学习的图像配准(DLIR)与传统优化方法的性能对比。论文比较了传统优化方法和基于学习的学习方法在DIR中的性能,指出传统方法在跨模态的泛化能力和稳健性能方面具有优势,而基于学习的方法则通过弱监督来实现更优的性能。通过一系列实验,论文验证了在无监督设置下,基于学习的方法在标签匹配性能上并没有显著超越传统方法,并提出了一个假设,即学习方法中的架构设计不太可能影响像素强度分布和标签之间的互信息,因此也不太可能显著提升基于学习的方法的性能。此外,论文还展示了在弱监督下,基于学习的方法具有更高的配准精度,这是传统方法难以实现的。然而,基于学习的方法对数据分布的变化较为敏感,并且未能展现出对数据分布变化的鲁棒性。论文最后给出结论,如果没有大型标记数据集,传统优化方法仍然是更优的选择。
arXiv,
2024-08-11T18:20:08Z.
DOI: 10.48550/arXiv.2408.05839
Abstract:
Classical optimization and learning-based methods are the two reigningparadigms in deformable image registration. While optimization-based methodsboast generalizability across modalities and robust performance, learning-basedmethods promise peak performance, incorporating weak supervision and …
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Classical optimization and learning-based methods are the two reigningparadigms in deformable image registration. While optimization-based methodsboast generalizability across modalities and robust performance, learning-basedmethods promise peak performance, incorporating weak supervision and amortizedoptimization. However, the exact conditions for either paradigm to perform wellover the other are shrouded and not explicitly outlined in the existingliterature. In this paper, we make an explicit correspondence between themutual information of the distribution of per-pixel intensity and labels, andthe performance of classical registration methods. This strong correlationhints to the fact that architectural designs in learning-based methods isunlikely to affect this correlation, and therefore, the performance oflearning-based methods. This hypothesis is thoroughly validated withstate-of-the-art classical and learning-based methods. However, learning-basedmethods with weak supervision can perform high-fidelity intensity and labelregistration, which is not possible with classical methods. Next, we show thatthis high-fidelity feature learning does not translate to invariance to domainshift, and learning-based methods are sensitive to such changes in the datadistribution. Finally, we propose a general recipe to choose the best paradigmfor a given registration problem, based on these observations.
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117.
尹志
(2024-10-31 13:55):
#paper doi.org/10.1038/sdata.2014.22 Quantum chemistry structures and properties of 134 kilo molecules, Scientific Data 1, 140022, 2014. 这是著名的数据集QM9的原始论文,最近在做相关计算工作,
又好好读了一下。非常重要的工作,给后续各种量化计算提供了特别方便的benchmark。该工作使用DFT方法(B3LYP/6-31G(2df,p))计算了134k种小分子的各种量化性质,比如能量、偶极矩、极化率等。
Scientific Data,
2014-8-5.
DOI: 10.1038/sdata.2014.22
Abstract:
No abstract available.
118.
盼盼
(2024-10-31 10:55):
#paper doi.org/10.1038/s41586-024-08133-1 2024年10月30日,深圳先进技术研究院胡政团队在Nature发表题为Polyclonal-to-monoclonal transition in colorectal precancerous evolution的研究论文,首次揭示了肿瘤从多克隆到单克隆转变的早期演化新模式,系统阐明了这一过程中细胞间的相互作用机制。通过谱系示踪技术和单细胞转录组测序,研究团队在小鼠模型和人类癌前病变组织中观察到,早期肿瘤病变往往具有多个独立的细胞克隆来源,这些克隆在肿瘤发生的早期阶段通过细胞间的通讯和合作共同推动病变进展。随着肿瘤的发展,这些多克隆逐渐被一个优势克隆所替代,转变为单克隆肿瘤。这说明单克隆肿瘤比多克隆肿瘤具有更高的恶性程度,单克隆肿瘤可能代表肿瘤发生的更“晚期”阶段。这些发现为理解肿瘤起源提供了全新的概念框架,并提出通过靶向细胞间通讯来实现早期干预的肿瘤预防新策略。
119.
符毓 Yu
(2024-10-30 21:44):
#paper doi:10.3390/aerospace6030026 Aerospace, 2019, Electric VTOL Configurations Comparison 本文介绍了自五十年代以来建造的 VTOL,并讨论了它们的优点、缺点和问题。对三种代表性 eVTOL(每种主要配置一种)的五个主要参数和三个参考任务进行了比较。这些参数包括磁盘负载、总悬停时间、巡航速度、实际航程和飞行时间。通过计算所需的时间和能量,评估了 eVTOL 在城市、城郊和远程任务中的性能。结果表明,最佳配置取决于任务。多旋翼飞机在悬停时效率更高。矢量推力喷气发动机在巡航时效率更高,航程也更大。升力 + 巡航是一种折衷方案。
Aerospace,
2019-2-28.
DOI: 10.3390/aerospace6030026
Abstract:
In the last ten years, different concepts of electric vertical take-off and landing aircrafts (eVTOLs) have been tested. This article addresses the problem of the choice of the best configuration. …
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In the last ten years, different concepts of electric vertical take-off and landing aircrafts (eVTOLs) have been tested. This article addresses the problem of the choice of the best configuration. VTOLs built since the fifties are presented and their advantages, disadvantages, and problems are discussed. Three representative eVTOLs, one for each main configuration, are compared on five main parameters and three reference missions. The parameters are disk loading, total hover time, cruise speed, practical range, and flight time. The performance of the eVTOLs on the urban, extra-urban, and long-range mission is evaluated computing the time and energy required. The results show that the best configuration depends on the mission. The multirotor is more efficient in hover. The vectored thrust jet is more efficient in cruise and has a higher range. The lift + cruise is a compromise.
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120.
徐炳祥
(2024-10-30 20:29):
#paper doi: 10.1016/j.molcel.2017.04.010 Molecular Cell, 2017, Dynamic Rewiring of Promoter-Anchored Chromatin Loops during Adipocyte Differentiation。这篇旧文是目前已知的唯一一项以3T3-L1细胞的体外脂肪分化过程为研究对象的三维基因组学研究。作者使用Promoter capture Hi-C (PCHi-C)技术测定了分化过程中的关键时点的染色质构象图谱,结合对应时点的RNA-seq,重要转录因子和组蛋白修饰信号进行了联合分析。结果显示TAD结构在分化全称保持稳定,Promoter-enhancer相互作用(EPI)表现出明显的与分化过程中的基因表达调控模式一致的成波次状的增强和消退。这些行为与H3K27ac的富集和消退高度一致,而与H3K4me1/2无关。此外,在与Promoter相连的Enhancer上同时富集激活信号如MED1/SMC1/P300,和抑制信号如NcoR/HDAC,反映出EPI对基因表达的复杂调控作用。本文提供了一套比较全面的3T3-L1分化过程的表观组学数据,其分析和可视化方法均有可借鉴之处,尤其是对三个时点的序贯数据的分析和呈现。