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白鸟
(2025-09-17 17:16):
#paper doi: 10.3389/fimmu.2021.626793. The Future of Blood Testing Is the Immunome
该文章是2021年发表的,文章标题很直接,血液检测的未来是免疫组。AIRRC社区参与此文章的撰写。
1.免疫组:TCR和BCR序列的重排;多样性和复杂性;克隆扩增,充当信号放大器,是个体免疫状态的记录;
2.免疫血液检测:常规临床采血-->开发特定疾病检测方法(阳性病例/阴性对照)-->疾病特征模式-->多疾病多重检测-->人工智能优化疾病分类器
抗体重链或TR β链序列的CDR3;
3.临床意义:患者分层;预后疾病风险;可变区基因、CDR3序列或其他复杂基序的过度表达:疾病或疾病易感性的指纹;
4.临床应用:血液系统恶性肿瘤;克隆指纹标记;肿瘤微小残留病灶;
抗体可变基因序列中体细胞高突变:白血病的预后标志物;
5.AIRR-seq的优势和相关数据库:IMGT,OGRDB,VDJdb,IEDB,IEDB;
6.挑战:1)样本采集时间很重要;2)样本制备需要标准化;3)分析流程需要清晰描述和验证;4)测序和计算资源,检出时间;5)样本临床注释;6)建立临床数据存储共享体系;7)特征标记、模式需稳健性和可解释性,还需建立关联年龄、性别、遗传背景及地理环境的“参考范围”。
7.免疫组库临床指导方针:通用实验室检测
8.应用潜力:疾病诊断与预后评估、药物耐受性或反应性、免疫缺陷检测、抗肿瘤及免疫疗法反应监测、病情进展与康复状态追踪;
Frontiers in Immunology,
2021-3-15.
DOI: 10.3389/fimmu.2021.626793
Abstract:
It is increasingly clear that an extraordinarily diverse range of clinically important conditions—including infections, vaccinations, autoimmune diseases, transplants, transfusion reactions, aging, and cancers—leave telltale signatures in the millions of V(D)J-rearranged …
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It is increasingly clear that an extraordinarily diverse range of clinically important conditions—including infections, vaccinations, autoimmune diseases, transplants, transfusion reactions, aging, and cancers—leave telltale signatures in the millions of V(D)J-rearranged antibody and T cell receptor [TR per the Human Genome Organization (HUGO) nomenclature but more commonly known as TCR] genes collectively expressed by a person’s B cells (antibodies) and T cells. We refer to these as the immunome. Because of its diversity and complexity, the immunome provides singular opportunities for advancing personalized medicine by serving as the substrate for a highly multiplexed, near-universal blood test. Here we discuss some of these opportunities, the current state of immunome-based diagnostics, and highlight some of the challenges involved. We conclude with a call to clinicians, researchers, and others to join efforts with the Adaptive Immune Receptor Repertoire Community (AIRR-C) to realize the diagnostic potential of the immunome.
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