当前共找到 27 篇文献分享,本页显示第 21 - 27 篇。
21.
孤舟蓑笠翁 (2025-10-15 10:32):
paper 【doi】10.1038/s41588-025-02351-7;【发表年份】2025年;【期刊】Nature Genetics;【标题】Spatial signatures for predicting immunotherapy outcomes using multi-omics in non-small cell lung cancer。【内容总结】这项研究的目标是开发能够预测非小细胞肺癌(NSCLC)患者对免疫治疗(基于PD-1的疗法)反应的生物标志物,因为目前只有少数患者能从中受益,且治疗可能产生严重副作用。研究团队采用了一种结合空间信息的多种组学技术(称为“空间多组学”),具体包括空间蛋白质组学(使用CODEX技术)和空间转录组学(使用DSP-GeoMx WTA技术),对来自三个独立患者队列(耶鲁大学、昆士兰大学和雅典大学,共234名晚期NSCLC患者)的肿瘤样本进行了分析,以描绘肿瘤免疫微环境(TIME),并运用机器学习方法(如LASSO惩罚的Cox回归模型)来训练与治疗结果相关的细胞类型特征和基因特征。研究发现,在肿瘤区域,增殖的肿瘤细胞、粒细胞和血管细胞构成了一个“耐药特征”,与较差的2年无进展生存期(PFS)显著相关(在训练队列中风险比HR=3.8);而在基质区域,M1/M2巨噬细胞和CD4 T细胞构成了一个“应答特征”,与较好的PFS相关(在训练队列中HR=0.4)。进一步地,研究从这些细胞类型中提取出相关的基因,构建了基因层面的特征,例如耐药基因特征(包含KRT7, KRT18等8个基因)在验证队列中也能预测较差的PFS(HR在1.7到5.3之间),而应答基因特征(包含SIGLEC1, CXCL9等8个基因)则预测较好的PFS(HR在0.22到0.56之间)。空间分析还揭示了这些细胞之间的相互作用和空间分布模式,例如发现巨噬细胞上的PD-L1表达(而非肿瘤细胞上的)与更好的治疗反应相关。这些空间多组学特征为在NSCLC中实现精准免疫治疗提供了新的强大工具。
Abstract:
Abstract Non-small cell lung cancer (NSCLC) shows variable responses to immunotherapy, highlighting the need for biomarkers to guide patient selection. We applied a spatial multi-omics approach to 234 advanced NSCLC … >>>
Abstract Non-small cell lung cancer (NSCLC) shows variable responses to immunotherapy, highlighting the need for biomarkers to guide patient selection. We applied a spatial multi-omics approach to 234 advanced NSCLC patients treated with programmed death 1-based immunotherapy across three cohorts to identify biomarkers associated with outcome. Spatial proteomics (n = 67) and spatial compartment-based transcriptomics (n = 131) enabled profiling of the tumor immune microenvironment (TIME). Using spatial proteomics, we identified a resistance cell-type signature including proliferating tumor cells, granulocytes, vessels (hazard ratio (HR) = 3.8, P = 0.004) and a response signature, including M1/M2 macrophages and CD4 T cells (HR = 0.4, P = 0.019). We then generated a cell-to-gene resistance signature using spatial transcriptomics, which was predictive of poor outcomes (HR = 5.3, 2.2, 1.7 across Yale, University of Queensland and University of Athens cohorts), while a cell-to-gene response signature predicted favorable outcomes (HR = 0.22, 0.38 and 0.56, respectively). This framework enables robust TIME modeling and identifies biomarkers to support precision immunotherapy in NSCLC. <<<
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22.
孤舟蓑笠翁 (2025-10-14 13:15):
paper 【doi】10.1016/j.stem.2025.09.007;【发表年份】2025年;【期刊】Cell Stem Cell;【标题】Hypoxia promotes airway differentiation in the human lung epithelium。【内容总结】这项研究旨在探索氧气浓度(缺氧)如何影响人类肺部上皮细胞的发育和分化,特别是为什么气道细胞在低氧环境下形成而肺泡细胞则被抑制。研究人员使用人类胎儿肺部类器官作为模型,通过单细胞RNA测序、基因编辑(CRISPRi)和靶向DNA结合分析(DamID-seq)等方法,发现低氧环境通过激活HIF(缺氧诱导因子)通路,特别是HIF1α和HIF2α这两个蛋白,来促进肺部祖细胞分化为气道细胞(如基底细胞和分泌细胞),同时抑制肺泡细胞命运;具体机制包括HIF1α和HIF2α直接调控下游基因如KLF4和KLF5,从而驱动细胞分化,并且缺氧还能使成熟的肺泡细胞转化为气道样细胞,这有助于解释肺部疾病中的异常细胞变化。研究结果表明,缺氧在人类肺部发育中是一个关键的环境信号,直接影响细胞命运决定,并为理解缺氧相关肺部疾病提供了新见解。
23.
孤舟蓑笠翁 (2025-10-11 11:01):
#paper 【doi】10.1126/science.adp5056;【发表年份】2025年;【期刊】Science;【标题】A cGAS-mediated mechanism in naked mole-rats potentiates DNA repair and delays aging。【内容总结】裸鼹鼠能活37年,比同体型啮齿动物长寿近10倍,团队想知道它如何靠DNA修复避免衰老;作者先把裸鼹鼠的环GMP-AMP合酶(cGAS,一种原本在人类和小鼠里会抑制同源重组HR修复的免疫传感器)克隆出来,发现它反而增强HR,原因是C端444-554区段有4个氨基酸(S463、E511、Y527、T530)与人和小鼠不同,这4点突变让cGAS在DNA损伤后不被E3泛素连接酶TRIM41打上K48泛素链,从而不招P97 segregase把它从染色质上拖走,停留时间延长,充当“脚手架”把FA通路蛋白FANCI和DSB修复蛋白RAD50拉到一起,促进RAD50装载和RAD51招募,HR效率提高,基因组更稳定;为了验证功能,他们用CRISPR敲除、点突变、嵌合蛋白、共免疫沉淀、质谱、体外pull-down、彗星实验、HR报告基因、果蝇转基因、老年小鼠AAV尾静脉注射等方法,证明把这4个氨基酸换成“人源”版本就会失去促修复和抗衰老能力,而把人源cGAS换成“裸鼹鼠”版本则获得同样好处;在果蝇中表达裸鼹鼠cGAS(酶失活版)可下调衰老标志基因、减少肠道干细胞过度增殖、降低肠渗漏、提高攀爬和产卵力,平均寿命延长约15%,而人源cGAS则缩短寿命,4点突变可反转这些表型;17月龄小鼠接受裸鼹鼠cGAS AAV后,虚弱指数下降、毛发灰白减少、血液IgG和IL-6降低、肝肾肠衰老细胞减少、γH2AX焦点减少,肾功能改善,且效果依赖这4个氨基酸;故事讲清“负调控因子也能被进化逆转成延寿助手”,并提示通过基因或药物模仿这4个氨基酸变化、增强cGAS染色质停留,或可作为延缓人类衰老的新策略。
Science, 2025-10-9. DOI: 10.1126/science.adp5056
Abstract:
Efficient DNA repair might make possible the longevity of naked mole-rats. However, whether they have distinctive mechanisms to optimize functions of DNA repair suppressors is unclear. We find that naked … >>>
Efficient DNA repair might make possible the longevity of naked mole-rats. However, whether they have distinctive mechanisms to optimize functions of DNA repair suppressors is unclear. We find that naked mole-rat cyclic guanosine monophosphate–adenosine monophosphate synthase (cGAS) lacks the suppressive function of human or mouse homologs in homologous recombination repair through the alteration of four amino acids during evolution. The changes enable cGAS to retain chromatin longer upon DNA damage by weakening TRIM41-mediated ubiquitination and interaction with the segregase P97. Prolonged chromatin binding of cGAS enhanced the interaction between repair factors FANCI and RAD50 to facilitate RAD50 recruitment to damage sites, thereby potentiating homologous recombination repair. Moreover, the four amino acids mediate the function of cGAS in antagonizing cellular and tissue aging and extending life span. Manipulating cGAS might therefore constitute a mechanism for life-span extension. <<<
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24.
惊鸿 (2025-10-05 22:27):
#paper 论文标题:Developing glycosylase-based T-to-G and C-to-K base editors in rice 论文发表时间:2025年3月24日 论文DOI:10.1111/pbi.70063 这篇论文的观后感在于它展示了基因编辑技术向更精细维度迈进的重要突破,研究团队成功开发了基于DNA糖基化酶的胸腺嘧啶和胞嘧啶碱基编辑器,分别实现了水稻中T>G和C>K的精准替换,这不仅填补了植物中四种碱基编辑技术的最后空白,更构建了完整的水稻碱基编辑技术体系,为作物内源抗性基因的定向进化提供了全新工具,这种基于糖基化酶的编辑方法相较于传统脱氨酶介导的编辑技术,拓展了碱基替换的类型范围,尤其在实现T>G和C>G/T替换方面展现出独特优势,虽然编辑效率仍有优化空间,但其能够诱导产生多种核苷酸插入和缺失的特点,也为创造更丰富的遗传变异提供了可能,这项研究标志着基因编辑从“切割”走向“改写”的深化,为作物抗病育种和种质创新提供了更精准、更多元的技术支撑。
25.
惊鸿 (2025-10-05 22:17):
#paper 论文标题:Transgene- and tissue culture-free heritable genome editing using RNA virus-based delivery in wheat 论文发表时间:2025年6月27日 论文DOI:10.1038/s41477-025-02023-8 这篇论文的观后感在于它展示了一种颠覆性的技术路径ViGET系统,该技术利用大麦黄条点花叶病毒BYSMV作为载体将CRISPRCas9编辑元件直接递送到小麦体内,实现了无需传统遗传转化和组织培养的可遗传基因编辑,这种方法最引人注目的突破在于它成功绕过了对基因型的依赖性并在当代就获得了不含外源转基因元件的纯合突变体,为六倍体小麦等难转化作物提供了高效育种方案,当然该技术目前仍面临编辑效率提升和病毒载体安全性优化等挑战,但无疑为作物精准育种开辟了极具潜力的新方向。
26.
DeDe宝 (2025-10-03 00:43):
#paper Ormond, J., O’Keefe, J. Hippocampal place cells have goal-oriented vector fields during navigation. Nature 607, 741–746 (2022). https://doi.org/10.1038/s41586-022-04913-9这篇文章的核心内容是研究海马体中的位置细胞(place cells)在导航过程中如何动态支持目标导向的行为。研究者令大鼠在蜂窝状的迷宫中进行导航实验,大鼠需要从不同的起始平台导航到目标平台以获取食物奖励,每次移动都仅限于两个选项的强制二选一。在导航过程中,研究者记录并评估大鼠的头朝向和CA1位置细胞活动。研究发现,位置细胞的活动形成了向量场,这些向量场汇聚到环境中的特定位置,称为“汇聚点”(Convergence Sinks,简称ConSinks)。这些ConSinks在环境中分布广泛(甚至超出平台),但在目标位置附近最为密集。当目标位置改变时,ConSinks和向量场会向新的目标位置移动。这表明位置细胞不仅编码了大鼠当前的位置,还提供了到达目标的方向信息。在正确选择路径时,位置细胞的活动与目标方向一致,而在错误选择时,这种活动模式被破坏。这表明位置细胞的活动直接影响大鼠的空间行为。此外,研究还发现,在开放场地觅食任务中,位置细胞的ConSinks调谐较少,这表明ConSinks调谐在目标导向的导航中更为显著。
Abstract:
AbstractThe hippocampal cognitive map supports navigation towards, or away from, salient locations in familiar environments1. Although much is known about how the hippocampus encodes location in world-centred coordinates, how it … >>>
AbstractThe hippocampal cognitive map supports navigation towards, or away from, salient locations in familiar environments1. Although much is known about how the hippocampus encodes location in world-centred coordinates, how it supports flexible navigation is less well understood. We recorded CA1 place cells while rats navigated to a goal on the honeycomb maze2. The maze tests navigation via direct and indirect paths to the goal and allows the directionality of place cells to be assessed at each choice point. Place fields showed strong directional polarization characterized by vector fields that converged to sinks distributed throughout the environment. The distribution of these ‘convergence sinks’ (ConSinks) was centred near the goal location and the population vector field converged on the goal, providing a strong navigational signal. Changing the goal location led to movement of ConSinks and vector fields towards the new goal. The honeycomb maze allows independent assessment of spatial representation and spatial action in place cell activity and shows how the latter relates to the former. The results suggest that the hippocampus creates a vector-based model to support flexible navigation, allowing animals to select optimal paths to destinations from any location in the environment. <<<
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27.
少颖 (2025-10-02 22:56):
#paper doi:10.3389/fpsyg.2023.1268614 Front. Psychol., 23 November 2023 More sense of self-discipline, less procrastination: the mediation of autonomous motivation 该文章提供的 “提升自控力要领” 可概括为:以 “自律感” 为核心,通过 “长期积累特质 + 短期激活状态” 双路径,结合 “绑定个人价值、积累小成功、调整环境” 等实操方法,激活自主动机,最终形成 “自律→主动行动→更少拖延” 的正向循环。这种方法无需依赖专业干预,可通过日常行为落地,尤其适用于学生、职场人等面临任务拖延的群体。
Abstract:
Procrastination is considered a result of failed self-regulation. However, could experiencing a sense of successful self-discipline help to boost motivation and reduce procrastination? To explore this question, two studies were … >>>
Procrastination is considered a result of failed self-regulation. However, could experiencing a sense of successful self-discipline help to boost motivation and reduce procrastination? To explore this question, two studies were conducted to investigate the relationship between the sense of self-discipline, autonomous motivation, and procrastination. Results showed that trait sense of self-discipline negatively predicted general procrastination (Study 1); self-discipline primed participants procrastinated less than the control group (Study 2); autonomous motivation mediated the relationship between sense of self-discipline and procrastination (Study 1 and Study 2). These findings suggest that cultivating a sense of self-discipline can have positive effects on both autonomous motivation and procrastination, and provide useful guidance for interventions aimed at reducing procrastination. <<<
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