孤舟蓑笠翁
(2025-06-25 21:37):
#paper 【doi】10.1126/science.adu8249;【发表年份】2025年;【期刊】Science;【标题】Lineage-resolved analysis of embryonic gene expression evolution in C. elegans and C. briggsae。【内容总结】这篇论文想搞清楚两种线虫(C. elegans和C. briggsae)在胚胎发育过程中基因表达如何进化。研究者们用单细胞RNA测序技术分析了超过17.5万个细胞,比较了429种相同细胞类型的基因表达模式。主要方法包括:单细胞转录组测序、正交基因比对、基因表达距离计算(Jensen-Shannon距离)和基因调控网络构建。结果发现虽然两种线虫分化了2000万年,但大多数基因表达模式保守,尤其是肌肉和肠道细胞;神经元细胞差异较大,可能与适应环境有关。他们还发现发育中期(200细胞阶段)基因表达最保守,支持"发育沙漏"模型。有趣的是,一些快速进化的基因家族(如神经肽和核激素受体)在神经元中特别活跃,可能是行为适应的关键。研究还揭示了基因复制后表达模式的分化现象,比如有些复制基因会变得表达更特异或表达量更低。这些发现为理解发育进化提供了细胞水平的详细视角。
Science,
2025-6-19.
DOI: 10.1126/science.adu8249
Lineage-resolved analysis of embryonic gene expression evolution in C. elegans and C. briggsae
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Abstract:
The constraints that govern the evolution of gene expression patterns across development remain unclear. Single-cell RNA sequencing can detail these constraints by systematically profiling homologous cells. The conserved invariant embryonic lineage of Caenorhabditis elegans and C. briggsae makes them ideal for comparing cell type gene expression across evolution. Measuring the spatiotemporal divergence of gene expression across embryogenesis, we find a high level of similarity in gene expression programs between species despite tens of millions of years of evolutionary divergence. Nonetheless, thousands of genes show divergence in their cell type specific expression patterns, with enrichment for functions in environmental response and behavior. Neuronal cell types show higher divergence than others such as the intestine and germline. This work identifies likely constraints on the evolution of developmental gene expression.
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