来自用户 钟鸣 的文献。
当前共找到 32 篇文献分享,本页显示第 1 - 20 篇。
1.
钟鸣
(2024-11-30 23:20):
#paper doi:10.1016/j.envint.2023.108349 本文作者通过两阶段的富集过程,从超级蠕虫的肠道微生物群落中建立了稳定且可复制的塑料相关生物膜群落。第一阶段是让蠕虫食用塑料,第二阶段是对食用塑料的蠕虫的肠道微生物群落进行体外孵化。研究结果表明塑料喂养对细菌多样性的影响较小,但显著改变了不同细菌群的相对丰度,并富集了潜在的塑料降解菌。在体外孵化过程中,微生物群落的更显著变化,塑料降解菌被进一步富集,而乳酸菌等其他菌类则减少。塑料特性分析证实了塑料相关微生物群落对孵化塑料的降解作用。通过基因丰度和群落表型的社区功能推断,体外孵化增强了塑料降解潜力。
Environment International,
2024-1.
DOI: 10.1016/j.envint.2023.108349
Abstract:
No abstract available.
2.
钟鸣
(2024-10-29 17:26):
doi:10.1007/s12264-019-00379-4 Long-term Fiber Photometry for Neuroscience Studies
摘录要点如下:
DIY光纤植入物(插针),因此用功率计检测光透过性,连接插针前的功率为30uw,连接后不应低于25uw。
AAV 可在高达 4 °C 的温度下储存至少 1 个月,滴度不会明显下降
注射病毒时,抽取比实际注射的病毒载体量多 100 nL
使用手术刀刀片使颅骨粗糙;这将有助于陶瓷套圈与牙科粘接剂牢固地粘附到颅骨上
颅骨打孔时颅钻不要钻穿硬脑膜,从孔中取出骨碎屑,并使用注射器尖端 (0.4 mm) 刺穿硬脑膜,而不会损坏皮层。
固定螺钉距离光纤至少至少 2 mm
以 46 nL/min 的速率注射病毒载体,总体积为 200 nL–500 nL(注射速度不应快于 100 nL/min)
不要让牙科粘结剂与皮肤接触;这将导致植入纤维的固定不成功
将哑光黑色指甲油均匀涂抹在干燥的牙科上,以阻挡光纤光度测量过程中自然光的干扰
将盐酸林可霉素和盐酸利多卡因凝胶涂抹在消毒的切口部位,作为镇痛和抗炎药
使用于光纤光度测量记录的房间尽可能暗
开机后等待~15分钟,使光强度稳定下来
新更换的光跳线应在高光强度(例如 10 mW)下漂白至少 20 分钟
将跳线尖端的实际激光功率调整为 30 μW。避免使用更高的功率,因为它会导致荧光信号的强烈漂白
连接动物后的最初几分钟内,由于荧光漂白,荧光信号振幅会迅速降低。信号将相对稳定在仍高于初始基线的水平(即未连接的动物)。
我们选择基线的 5 个标准差作为阈值,以定义荧光信号的显着波动。
Neuroscience Bulletin,
2019-6.
DOI: 10.1007/s12264-019-00379-4
Abstract:
No abstract available.
3.
钟鸣
(2024-09-29 15:36):
#paper doi:10.1016/j.tics.2021.02.007 The Psychology of Fake News 人们为什么会相信假新闻(谣言)?作者以美国人为主要对象在这里做了简要回顾。读者的政治立场并不会影响到其轻信谣言的可能性,这与此前的认识是不同的。然而,对谣言的熟悉度、权威/精英发布或转载的谣言、点赞量多的谣言、以及能引起读者强烈情绪反应的谣言,更容易被轻信。这些原因似乎指向一个共同的现象就是读者被骗时是处于一种很自然的无意识状态,没有对信息真实性做真假判断。对此,也有一些有效的对策可减轻谣言的传播:媒体识别并限流谣言(风险是错误识别造成的不合理审查);为谣言内容附上警告;对读者进行简明扼要的识别谣言的教育,如“12个技巧列表”;使用众裁代替专业人员识别和鉴定谣言;
Trends in Cognitive Sciences,
2021-5.
DOI: 10.1016/j.tics.2021.02.007
Abstract:
No abstract available.
4.
钟鸣
(2024-08-30 20:53):
#paper doi:10.1371/journal.pbio.3002771 A taxon-restricted duplicate of Iroquois3 is required for patterning the spider waist
蜘蛛有极其纤细的腰,其形成机制在发育生物学中引人注目但仍未阐明,这里作者使用RNA测序的方法发现了一个此前没有被注意到的基因,无腰基因。作者选择了个体较大容易解剖的蜘蛛,狼蛛。在其不同的发育阶段,对不同部位进行了解剖并分别建库测序。随后分析在不同发育阶段和不同部位(前体后体)中表达趋势明显变化的基因。通过更换筛选策略并结合RNA沉默技术进行功能验证。最后还结合原位杂交技术,观察了沉默无腰基因后的胚胎的形态学变化。
PLOS Biology,
2024-8-29.
DOI: 10.1371/journal.pbio.3002771
Abstract:
The chelicerate body plan is distinguished from other arthropod groups by its division of segments into 2 tagmata: the anterior prosoma (“cephalothorax”) and the posterior opisthosoma (“abdomen”). Little is understood …
>>>
The chelicerate body plan is distinguished from other arthropod groups by its division of segments into 2 tagmata: the anterior prosoma (“cephalothorax”) and the posterior opisthosoma (“abdomen”). Little is understood about the genetic mechanisms that establish the prosomal-opisthosomal (PO) boundary. To discover these mechanisms, we created high-quality genomic resources for the large-bodied spider Aphonopelma hentzi. We sequenced specific territories along the antero-posterior axis of developing embryos and applied differential gene expression analyses to identify putative regulators of regional identity. After bioinformatic screening for candidate genes that were consistently highly expressed in only 1 tagma (either the prosoma or the opisthosoma), we validated the function of highly ranked candidates in the tractable spider model Parasteatoda tepidariorum. Here, we show that an arthropod homolog of the Iroquois complex of homeobox genes is required for proper formation of the boundary between arachnid tagmata. The function of this homolog had not been previously characterized, because it was lost in the common ancestor of Pancrustacea, precluding its investigation in well-studied insect model organisms. Knockdown of the spider copy of this gene, which we designate as waist-less, in P. tepidariorum resulted in embryos with defects in the PO boundary, incurring discontinuous spider germ bands. We show that waist-less is required for proper specification of the segments that span the prosoma-opisthosoma boundary, which in adult spiders corresponds to the narrowed pedicel. Our results demonstrate the requirement of an ancient, taxon-restricted paralog for the establishment of the tagmatic boundary that defines Chelicerata.
<<<
翻译
5.
钟鸣
(2024-07-31 22:11):
#paper doi:10.3389/frsps.2024.1359672 The influence of recall direction on judgments of subjective temporal distance from the beginning of the COVID-19 pandemic lockdowns
人对一段历史的的回忆有两种方式:前向回忆(从古至今)和后向回忆(倒叙,从今至古),一般而言后向回忆会比前向回忆给人的心理感觉更近。但是在作者对约80名大学生关于新冠发生前后的7个标志性事件的访谈发现,这个结论被逆转了,即前向回忆者认为这7件标志性事件发生的时间比后向记忆者更近。针对这一现象作者分析了4个可能的原因:1新冠时候人们比较无聊;2由于聚光灯效应(印象越深刻的事情越觉得刚发生不久)的存在,且情绪会因更具前瞻性的时间顺序叙述而增强,而不是反向叙述;3事件效价,即情绪会因更具前瞻性的时间顺序叙述而增强而不是反向叙述4疫情的开放性让后向回忆感觉更加费力,从而导致判断时间距离更大
Frontiers in Social Psychology,
2024-6-24.
DOI: 10.3389/frsps.2024.1359672
Abstract:
IntroductionIn a series of 5 studies, Lam and Buehler found that first-year university students felt closer to a target event (the day they learned that they were accepted into university) …
>>>
IntroductionIn a series of 5 studies, Lam and Buehler found that first-year university students felt closer to a target event (the day they learned that they were accepted into university) when they recalled a stream of related events in a backward direction (a reverse-chronological order ending with the target event) than when they recalled those events in a forward direction (a forward-chronological order beginning with the target event).MethodsIn a conceptual replication of their Study 2, we asked participants how close they felt to the first day that lockdowns were imposed in response to the Covid-19 pandemic in the U.S. (federally mandated on March 13, 2020) following either backward or forward recall of a stream of related events.ResultsThe results of the present study ran directly counter to those of Lam and Buehler: participants rated the first day of lockdowns as feeling closer following forward recall than following backward recall.DiscussionPotential explanations for this reversal of Lam and Buehler's effect are discussed that focus on the temporal distortions that people have been found to experience when they think about autobiographical events that occurred at the beginning of the pandemic.
<<<
翻译
6.
钟鸣
(2024-06-30 23:55):
#paper The postfeminist entrepreneurial self and the platformisation of labour: A case study of yesheng female lifestyle bloggers on Xiaohongshu doi:10.1177/2059436422109589
这是一篇充满浓郁女性特色的学术论文:一个女性作者采访了8位女性博主,所在的平台(小红书)也是以女性为主要用户。作者访谈了8位博主,主要关注的问题是选择这份工作的动机(兴趣、社会对女性“顾家”的期待),以及在MCN背景下(平台劳动)受到的桎梏。文章的层次和条理不是很明确,更像是一篇采访后的随笔。文章篇幅不长但是洋洋洒洒,通过阅读这么一篇文章可以对后女权主义、消费主义、创业主义和新自由主义都有一定认识,管中窥豹。
7.
钟鸣
(2024-05-27 23:13):
#paper doi:10.1016/j.neuron.2023.11.016 Lights, fiber, action! A primer on in vivo fiber photometry
这是一篇比较权威也比较新出炉的综述,讲解全面也细致。
首先,指出近年来光度测定法迅速发展和普遍使用的背景,以及与其他方法相比独特的优势。
随后,讲解了不同类型的生物传感器。包括列举传感器类型、讲解传感器的两大组成部分(传感域和荧光报告域)的结构基础及相应特性。着重介绍了传感器的选择,包括2种获得阴性对照信号的方式及要注意的坑,指出了将生物传感器导入体内的方式及利弊,也顺带着提了一嘴多光同用的价值。
第三块介绍了相关机器的硬件,包括光源的分类、多光源调制方式(频分/时分)、信号带宽、灵敏度、使用转环的利弊、无线系统、多模态(联用光遗传)等方面。作者还科普了3个新兴且有潜力的硬件:光谱可分辨传感器、锥形光纤、FLiP。
接下来就是数据处理部分。在预处理阶段,强调了中间步骤的重要性、要理解光度信号的组成成分及相应的噪音影响。很有价值的是,作者以图片形式展示了过滤、漂白校正、运动校正和标准化(DF/F 、Zscore)的处理效果及代码。当然作者也以文字介绍了上述过程的处理注意事项。
在数据分析这块,主要介绍的是事件关联分析和线性回归。这块有点抽象。
最后展望了一下未来。
Abstract:
Fiber photometry is a key technique for characterizing brain-behavior relationships in vivo. Initially, it was primarily used to report calcium dynamics as a proxy for neural activity via genetically encoded …
>>>
Fiber photometry is a key technique for characterizing brain-behavior relationships in vivo. Initially, it was primarily used to report calcium dynamics as a proxy for neural activity via genetically encoded indicators. This generated new insights into brain functions including movement, memory, and motivation at the level of defined circuits and cell types. Recently, the opportunity for discovery with fiber photometry has exploded with the development of an extensive range of fluorescent sensors for biomolecules including neuromodulators and peptides that were previously inaccessible in vivo. This critical advance, combined with the new availability of affordable "plug-and-play" recording systems, has made monitoring molecules with high spatiotemporal precision during behavior highly accessible. However, while opening exciting new avenues for research, the rapid expansion in fiber photometry applications has occurred without coordination or consensus on best practices. Here, we provide a comprehensive guide to help end-users execute, analyze, and suitably interpret fiber photometry studies.
<<<
翻译
8.
钟鸣
(2024-04-30 17:57):
#paper doi:10.1177/0141076816688346 Prevention and treatment of diabetic foot ulcers
糖尿病足是糖尿病最常见且危害很大的并发症之一,表现为足底溃疡坏死,严重者需要截肢。本文综述了糖尿病足的预防和治疗。病因方面,大致可理解为异常的糖代谢产物诱发神经细胞氧化应激,这些受损的神经元引起了异常的足底压力分配、负重、步态、痛觉敏感性、汗腺功能、脚型等。干预的主要措施是预防,包括医护人员对足部护理的投入程度,以及患者自身被教育的程度。治疗方面,控制血糖是根本,以及及时有效的清创术(清除浅表及深部的坏死及过度角化组织)、药物治疗、各种各样促进伤口愈合的敷料、负压抽吸伤口组织液以改善灌注和促进肉芽形成、用蛆去除坏死组织、使用生长因子促进组织愈合等。
IF:8.800Q1
Journal of the Royal Society of Medicine,
2017-Mar.
DOI: 10.1177/0141076816688346
PMID: 28116957
Abstract:
The rising prevalence of diabetes estimated at 3.6 million people in the UK represents a major public health and socioeconomic burden to our National Health Service. Diabetes and its associated …
>>>
The rising prevalence of diabetes estimated at 3.6 million people in the UK represents a major public health and socioeconomic burden to our National Health Service. Diabetes and its associated complications are of a growing concern. Diabetes-related foot complications have been identified as the single most common cause of morbidity among diabetic patients. The complicating factor of underlying peripheral vascular disease renders the majority of diabetic foot ulcers asymptomatic until latter evidence of non-healing ulcers become evident. Therefore, preventative strategies including annual diabetic foot screening and diabetic foot care interventions facilitated through a multidisciplinary team have been implemented to enable early identification of diabetic patients at high risk of diabetic foot complications. The National Diabetes Foot Care Audit reported significant variability and deficiencies of care throughout England and Wales, with emphasis on change in the structure of healthcare provision and commissioning, improvement of patient education and availability of healthcare access, and emphasis on preventative strategies to reduce morbidities and mortality of this debilitating disease. This review article aims to summarise major risk factors contributing to the development of diabetic foot ulcers. It also considers the key evidence-based strategies towards preventing diabetic foot ulcer. We discuss tools used in risk stratification and classifications of foot ulcer.
<<<
翻译
9.
钟鸣
(2024-03-31 00:55):
#paper doi: 10.1111/j.1467-8624.2008.01164.x Social and Cognitive Correlates of Children’s Lying Behavior 命令孩子在独处时不要触碰玩具,他能否做到?又是否会承认?这是研究儿童说谎的常用办法。约四成的3岁儿童会说谎,这一比例在5-7岁儿童中更高。相应的,3岁儿童的圆谎能力(语义泄漏控制)很弱,但一半的六七岁的儿童已经发展了这个能力。此外,儿童圆谎能力越弱,表明其抑制控制盒工作记忆越差,而儿童对说谎的道德概念比较弱,但是道德认识越强的儿童说谎的概率越低。
Abstract:
The relation between children's lie-telling and their social and cognitive development was examined. Children (3-8 years) were told not to peek at a toy. Most children peeked and later lied …
>>>
The relation between children's lie-telling and their social and cognitive development was examined. Children (3-8 years) were told not to peek at a toy. Most children peeked and later lied about peeking. Children's subsequent verbal statements were not always consistent with their initial denial and leaked critical information revealing their deceit. Children's conceptual moral understanding of lies, executive functioning, and theory-of-mind understanding were also assessed. Children's initial false denials were related to their first-order belief understanding and their inhibitory control. Children's ability to maintain their lies was related to their second-order belief understanding. Children's lying was related to their moral evaluations. These findings suggest that social and cognitive factors may play an important role in children's lie-telling abilities.
<<<
翻译
10.
钟鸣
(2024-02-29 23:59):
#paper doi:10.1177/0706743718773728 An Overview of Animal Models Related to Schizophrenia
精神分裂是一种复杂的精神类疾病,疾病模型的不成熟也限制了对该疾病的病因及治疗的进一步的深入理解。在本综述中,作者回顾了多种精神分裂动物模型的造模方式,按照原理可分为发育模型、药物诱导模型、遗传模型、性别模型等几大类。作者细说了各类模型的总体方法和数据细节,但是可以看出,这些造模方法都有遗传因素有很大关联。
Abstract:
Schizophrenia is a heterogeneous psychiatric disorder that is poorly treated with current therapies. In this brief review, we provide an update regarding the use of animal models to study schizophrenia …
>>>
Schizophrenia is a heterogeneous psychiatric disorder that is poorly treated with current therapies. In this brief review, we provide an update regarding the use of animal models to study schizophrenia in an attempt to understand its aetiology and develop novel therapeutic strategies. Tremendous progress has been made developing and validating rodent models that replicate the aetiologies, brain pathologies, and behavioural abnormalities associated with schizophrenia in humans. Here, models are grouped into 3 categories-developmental, drug induced, and genetic-to reflect the heterogeneous risk factors associated with schizophrenia. Each of these models is associated with varied but overlapping pathophysiology, endophenotypes, behavioural abnormalities, and cognitive impairments. Studying schizophrenia using multiple models will permit an understanding of the core features of the disease, thereby facilitating preclinical research aimed at the development and validation of better pharmacotherapies to alter the progression of schizophrenia or alleviate its debilitating symptoms.
<<<
翻译
11.
钟鸣
(2024-01-31 23:44):
#paper doi:10.1177/0146167218783195 The Cynical Genius Illusion: Exploring and Debunking Lay Beliefs About Cynicism and Competence
本文讨论的话题是“犬儒主义/愤世嫉俗/玩世不恭”,即那些精致利己、精明世俗、常持怀疑论且做预防性推理的人,与之对立的是非犬儒主义者/理想主义者,他们对陌生人的无私行为报以更少的动机揣度。通常,在艺术作品中愤世嫉俗者如福尔摩斯总被刻画成有能力、洞察力强、对环境的适应能力更强的人。为了确认“犬儒主义者是否拥有更强的能力(本文中泛指认知能力、学历、技能等具体技能)”,作者做了6个调查。前3个调查发现,世人的观念中,普遍认为犬儒主义者比非犬儒主义者能力更高,然而在后三个调查中,通过大规模的调查,作者发现真实情况与世人认识相反:非犬儒主义者的能力更强一些,绝大多数参与者预计愤世嫉俗的人在一系列认知任务和认知能力测试中比不愤世嫉俗的人表现得更好。作者分析认为,这可能是因为更高水平的教育和能力可能有助于个人首先发现并避免潜在的欺骗,从而减少负面社会经历的可能性,这反过来可能有助于对人性产生更积极的看法,此外,高水平的能力可能使个人能够正确识别其环境的“腐败”,并调整自己的愤世嫉俗程度以与之相匹配。最后,艺术作品中过于强调“愤世嫉俗的天才”也会强化公众的认知偏见。
Abstract:
Cynicism refers to a negative appraisal of human nature-a belief that self-interest is the ultimate motive guiding human behavior. We explored laypersons' beliefs about cynicism and competence and to what …
>>>
Cynicism refers to a negative appraisal of human nature-a belief that self-interest is the ultimate motive guiding human behavior. We explored laypersons' beliefs about cynicism and competence and to what extent these beliefs correspond to reality. Four studies showed that laypeople tend to believe in cynical individuals' cognitive superiority. A further three studies based on the data of about 200,000 individuals from 30 countries debunked these lay beliefs as illusionary by revealing that cynical (vs. less cynical) individuals generally do worse on cognitive ability and academic competency tasks. Cross-cultural analyses showed that competent individuals held contingent attitudes and endorsed cynicism only if it was warranted in a given sociocultural environment. Less competent individuals embraced cynicism unconditionally, suggesting that-at low levels of competence-holding a cynical worldview might represent an adaptive default strategy to avoid the potential costs of falling prey to others' cunning.
<<<
翻译
12.
钟鸣
(2023-12-28 19:27):
#paper doi:10.1002/cyto.a.23690 , Best Practices for Preparing a Single Cell Suspension from Solid Tissues for Flow Cytometry
本文是一篇综述,描述了从组织制备单细胞悬液的一般性经验和原则。制备单细胞悬液的本质是消化和降解掉细胞间的连接物,即胶原蛋白、蛋白聚糖和糖蛋白,同时也要注意试剂不能破坏细胞膜的完整性,以保护细胞表面分子的完整性,避免造成表位丢失。
分散酶、胶原酶、透明质酸酶用作将组织解离成小细胞团块,其中分散酶可能会破坏细胞表位。细胞-细胞间存在3种链接:1)闭塞连接、2)通信连接和3)锚定连接,使用胰蛋白酶或木瓜蛋白酶破坏他们。胰蛋白酶会对细胞膜蛋白有非常严重的影响,且会导致游离DNA诱导的细胞聚集,因此要避免使用。一种替代方案是木瓜蛋白酶,但其同样会导致游离 DNA 诱导的细胞聚集。还需要引入DNA酶来降解游离的DNA,通常使用DNase-I而非DNase-II,因为前者不启动细胞凋亡途径。钙离子在这一步是必要的,因其能充当DNA酶的激活剂。
关于酶的使用,确定酶解中所用酶的最佳强度和浓度是经验性的,对于正确分离细胞和成功消化组织至关重要。根据酶的不同,酶解也可以在 4°C或冰上进行,这些较低的温度可能会减慢酶的反应速率并延长潜伏期,但有助于最大限度地减少细胞死亡。
酶解结束后推荐使用流式计数,添加核染色剂可以区分完整细胞和细胞碎片,添加活性染料可以定量死细胞的百分比。如果下游是流式分析且需要保存一段时间,最好使用多聚甲醛固定,特别是对于脆弱/异质群体(例如肺单细胞)。
文章最后还提供了其他有益建议。
Abstract:
Preparing a single cell suspension is a critical step in any solid tissue flow cytometry experiment. Tissue dissection, enzymatic digestion, and mechanical dissociation are three significant steps leading to the …
>>>
Preparing a single cell suspension is a critical step in any solid tissue flow cytometry experiment. Tissue dissection, enzymatic digestion, and mechanical dissociation are three significant steps leading to the degradation of the extracellular matrix and the isolation of single cells, allowing the generation of high-quality flow cytometry data. Cells and the extracellular matrix contain various proteins and other structures which must be considered when designing a tissue digestion protocol to preserve the viability of cells and the presence of relevant antigens while digesting matrix components and cleaving cell-cell junctions. Evaluation of the single cell suspension is essential before proceeding with the labeling of the cells as high viability and absence of cell debris and aggregates are critical for flow cytometry. The information presented should be used as a general guide of steps to consider when preparing a single cell suspension from solid tissues for flow cytometry experiments. © 2018 International Society for Advancement of Cytometry.
<<<
翻译
13.
钟鸣
(2023-11-30 23:39):
#paper doi: 10.1002/ctm2.1354 IMPACT: A web server for exploring immunotherapeutic predictive and cancer prognostic biomarkers
这是一篇临床转化医学的数据库的文章,作者来自燃石、中国国家肿瘤中心等单位。数据库纳入了23000+样品、覆盖37种肿瘤,数据来源包括公共数据库、文献来源的数据集以及作者自己收集的一系列数据。数据库的主旨是挖掘和分析影响肿瘤预后的生物标志物。数据库功能还是比较多的,与既有的数据库相比更加灵活和细化,操作比较简便和直观,界面简洁一目了然,使用者可快速执行感兴趣的操作,提高分析效率。
Abstract:
No abstract available.
14.
钟鸣
(2023-10-30 16:06):
#paper doi: 10.1128/jb.00165-23 Three genes controlling streptomycin susceptibility in Agrobacterium fabrum 链霉素是一种氨基糖苷类抗生素,通过干扰16S rRNA的正常工作阻碍细菌复制,实现抗菌效果。农杆菌的链霉素抗性通常由rpsL、rsmG(也称为gidB)和rrs突变引起。本课题中,作者使用链霉菌做连续培养筛选和分析,获取了在低浓度和高浓度抗生素下筛选到的耐药菌准,由于传代筛选过程中未引入外源基因,表明内源性基因的突变调控了耐药性。由于低浓度下的突变体的耐药性高于高浓度下的突变体,因此作者分别对这两批突变体进行了测序。作者首先发现高浓度突变株的rpsL发生了突变而低浓度的没有,对突变的rpsL等位基因进行转移实现,验证了该等位基因能赋予野生型耐药性。对6株低浓度突变体的测序发现,都发生了导致rsmG功能丧失的突变,随后的敲除和回补实证实了该基因突变对链霉素抗性的影响。
Abstract:
ABSTRACT Streptomycin (Sm) is a commonly used antibiotic for its efficacy against diverse bacteria. The plant pathogen Agrobacterium fabrum is a model for studying pathogenesis and interkingdom gene transfer. Streptomycin-resistant …
>>>
ABSTRACT Streptomycin (Sm) is a commonly used antibiotic for its efficacy against diverse bacteria. The plant pathogen Agrobacterium fabrum is a model for studying pathogenesis and interkingdom gene transfer. Streptomycin-resistant variants of A. fabrum are commonly employed in genetic analyses, yet mechanisms of resistance and susceptibility to streptomycin in this organism have not previously been investigated. We observe that resistance to a high concentration of streptomycin arises at high frequency in A. fabrum , and we attribute this trait to the presence of a chromosomal gene ( strB ) encoding a putative aminoglycoside phosphotransferase. We show how strB , along with rpsL (encoding ribosomal protein S12) and rsmG (encoding a 16S rRNA methyltransferase), modulates streptomycin sensitivity in A. fabrum . IMPORTANCE The plant pathogen Agrobacterium fabrum is a widely used model bacterium for studying biofilms, bacterial motility, pathogenesis, and gene transfer from bacteria to plants. Streptomycin (Sm) is an aminoglycoside antibiotic known for its broad efficacy against gram-negative bacteria. A. fabrum exhibits endogenous resistance to somewhat high levels of streptomycin, but the mechanism underlying this resistance has not been elucidated. Here, we demonstrate that this resistance is caused by a chromosomally encoded streptomycin-inactivating enzyme, StrB, that has not been previously characterized in A. fabrum . Furthermore, we show how the genes rsmG , rpsL , and strB jointly modulate streptomycin susceptibility in A. fabrum .
<<<
翻译
15.
钟鸣
(2023-09-29 22:03):
#paper doi:10.1128/iai.00252-23 Protection against lethal sepsis following immunization with Candida species varies by isolate and inversely correlates with bone marrow tissue damage 文章通过攻毒保护实验探讨了不同念珠菌接种小鼠后引发的免疫保护能力。结果认为,不同毒力表型的分离株提供的保护作用各不相同,不提供交叉保护。第二,股骨组织的铁死亡和结构完整性可作为定量指标衡量分离株的毒力强弱。此外还有一个意料之外的现象:毒力最强的分离株提供的免疫保护作用却最弱。
Abstract:
Protection against lethal ()/ () intra-abdominal infection (IAI)-mediated sepsis can be achieved by a novel form of trained innate immunity (TII) involving Gr-1+ myeloid-derived suppressor cells (MDSCs) that are induced …
>>>
Protection against lethal ()/ () intra-abdominal infection (IAI)-mediated sepsis can be achieved by a novel form of trained innate immunity (TII) involving Gr-1+ myeloid-derived suppressor cells (MDSCs) that are induced by inoculation (immunization) with low virulence species [i.e., ()] that infiltrate the bone marrow (BM). In contrast, more virulent species (i.e., ), even at sub-lethal inocula, fail to induce similar levels of protection. The purpose of the present study was to test the hypothesis that the level of TII-mediated protection induced by strains inversely correlates with damage in the BM as a reflection of virulence. Mice were immunized by intraperitoneal inoculation with several parental and mutant strains of deficient in virulence factors (hyphal formation and candidalysin production), followed by an intraperitoneal challenge 14 d later and monitored for sepsis and mortality. Whole femur bones were collected 24 h and 13 d after immunization and assessed for BM tissue/cellular damage via ferroptosis and histology. While immunization with standard but not sub-lethal inocula of most wild-type strains resulted in considerable mortality, protection against lethal / IAI challenge varied by strain was usually less than that for , with no differences observed between parental and corresponding mutants. Finally, levels of protection afforded by the strains were inversely correlated with BM tissue damage ( = -0.773). TII-mediated protection against lethal sepsis induced by strain immunization inversely correlates with BM tissue/cellular damage as a reflection of localized virulence.
<<<
翻译
16.
钟鸣
(2023-08-28 21:14):
#paper doi: 10.1128/iai.00154-23 The choline-binding proteins PspA, PspC, and LytA of Streptococcus pneumoniae and their interaction with human endothelial and red blood cells
这是关于肺炎链球菌毒力因子研究的最新文章,研究路线也比较基础,通过同源重组获得靶蛋白的突变体,紧接着测毒力形状,包括生物膜形成能力、细胞染毒后的代谢活性、对细胞的粘附性、溶血活性、对细胞中特定蛋白表达的影响等,最后使用string预测了蛋白互作网络。
Abstract:
is a Gram-positive opportunistic pathogen that can colonize the upper respiratory tract. It is a leading cause of a wide range of infectious diseases, including community-acquired pneumonia and meningitis. Pneumococcal …
>>>
is a Gram-positive opportunistic pathogen that can colonize the upper respiratory tract. It is a leading cause of a wide range of infectious diseases, including community-acquired pneumonia and meningitis. Pneumococcal infections cause 1-2 million deaths per year, most of which occur in developing countries. Here, we focused on three choline-binding proteins (CBPs), i.e., PspC, PspA, and LytA. These pneumococcal proteins have different surface-exposed regions but share related choline-binding anchors. These surface-exposed pneumococcal proteins are in direct contact with host cells and have diverse functions. We explored the role of the three CBPs on adhesion and pathogenicity in a human host by performing relevant imaging and functional analyses, such as electron microscopy, confocal laser scanning microscopy, and functional quantitative assays, targeting biofilm formation and the hemolytic capacity of . biofilm formation assays and electron microscopy experiments were used to examine the ability of knockout mutant strains lacking the lytA, pspC, or pspA genes to adhere to surfaces. We found that LytA plays an important role in robust synthesis of the biofilm matrix. PspA and PspC appeared crucial for the hemolytic effects of on human red blood cells. Furthermore, all knockout mutants caused less damage to endothelial cells than wild-type bacteria, highlighting the significance of each CPB for the overall pathogenicity of . Hence, in addition to their structural function within the cell wall of , each of these three surface-exposed CBPs controls or mediates multiple steps during bacterial pathogenesis.
<<<
翻译
17.
钟鸣
(2023-07-30 10:58):
#paper doi:10.1128/iai.00037-23 Identification of Virulence Factors Involved in a Murine Model of Severe Achromobacter xylosoxidans Infection
本文使用正常鼠、免疫低下鼠、正常毒株、弱毒株进行攻毒实验,以此研究木糖氧化无色杆菌(Ax)的毒力影响因素。核心结论是,插入突变研究结果表明, III 型分泌系统、Vi 胶囊、antisigma-E 因子,以及ArtA 粘附素是影响毒力强弱的主要因素。
Abstract:
Achromobacter xylosoxidans (Ax) is an opportunistic pathogen and causative agent of numerous infections particularly in immunocompromised individuals with increasing prevalence in cystic fibrosis (CF). To date, investigations have focused on …
>>>
Achromobacter xylosoxidans (Ax) is an opportunistic pathogen and causative agent of numerous infections particularly in immunocompromised individuals with increasing prevalence in cystic fibrosis (CF). To date, investigations have focused on the clinical epidemiology and genomic comparisons of Ax isolates, yet little is known about disease pathology or the role that specific virulence factors play in tissue invasion or damage. Here, we model an acute Ax lung infection in immunocompetent C57BL/6 mice and immunocompromised CF mice, revealing a link between cytotoxicity and disease in an intact host. Mice were intratracheally challenged with sublethal doses of a cytotoxic (GN050) or invasive (GN008) strain of Ax. Bacterial burden, immune cell populations, and inflammatory markers in bronchoalveolar lavage fluid and lung homogenates were measured at different time points to assess disease severity. CF mice had a similar but delayed immune response toward both Ax strains compared to C57BL/6J mice. GN050 caused more severe disease and higher mortality which correlated with greater bacterial burden and increased proinflammatory responses in both mouse models. In agreement with the cytotoxicity of GN050 toward macrophages , mice challenged with GN050 had fewer macrophages. Mutants with transposon insertions in predicted virulence factors of GN050 showed that disease severity depended on the type III secretion system, Vi capsule, antisigma-E factor, and partially on the ArtA adhesin. The development of an acute infection model provides an essential tool to better understand the infectivity of diverse Ax isolates and enable improved identification of virulence factors important to bacterial persistence and disease.
<<<
翻译
18.
钟鸣
(2023-06-30 22:31):
#paper doi:10.1093/molbev/msad102 Caecilian Genomes Reveal the Molecular Basis of Adaptation and Convergent Evolution of Limblessness in Snakes and Caecilians
这是一篇比较基因组阐释进化问题的论文,比较的是蚓螈与蛇的基因组的共同特征,因为二者趋同进化至无足。作者分析了4个内容:重复区域分析、基因家族分析、正选择基因分析、ZRS增强子损失分析。分析结果集中于2点,第一点是这两个物种的基因组的 69% 以上都是由重复区域组成,其中逆转录转座子最为丰富。第二个发现是蚓螈的ZRS基因的增强子区域发生了缺失,这个基因在蛇中发生了突变,且该突变基因导入小鼠后会产生蛇样突变。这组证据强烈暗示该基因与无足表型的关联。
Abstract:
We present genome sequences for the caecilians Geotrypetes seraphini (3.8 Gb) and Microcaecilia unicolor (4.7 Gb), representatives of a limbless, mostly soil-dwelling amphibian clade with reduced eyes, and unique putatively …
>>>
We present genome sequences for the caecilians Geotrypetes seraphini (3.8 Gb) and Microcaecilia unicolor (4.7 Gb), representatives of a limbless, mostly soil-dwelling amphibian clade with reduced eyes, and unique putatively chemosensory tentacles. More than 69% of both genomes are composed of repeats, with retrotransposons being the most abundant. We identify 1,150 orthogroups that are unique to caecilians and enriched for functions in olfaction and detection of chemical signals. There are 379 orthogroups with signatures of positive selection on caecilian lineages with roles in organ development and morphogenesis, sensory perception, and immunity amongst others. We discover that caecilian genomes are missing the zone of polarizing activity regulatorysequence (ZRS) enhancer of Sonic Hedgehog which is also mutated in snakes. In vivo deletions have shown ZRS is required for limb development in mice, thus, revealing a shared molecular target implicated in the independent evolution of limblessness in snakes and caecilians.
<<<
翻译
19.
钟鸣
(2023-05-30 00:39):
#paper doi:10.2147/CCID.S247390 Asian Hair: A Review of Structures, Properties, and Distinctive Disorders
这是一篇讲头发(发质)的综述,重点是亚洲人的发质。作者首先对比了亚欧非人种头发的各项指标特性,包括生长速度、头发密度、硬度刚性韧性等。随后简单介绍了头发的物理结构,为后文的介绍做了铺垫。后文中大致介绍了亚洲人发质特性的成因,主要归结于正选择下的基因变异,即EDAR基因。最后作者还介绍了在亚洲人中更高发的毛发疾病,包括困扰当下年轻人的脱发和毛囊炎等疾病。
Abstract:
Asian hair is known for its straightness, dark pigmentation, and large diameter. The cuticle layer in Asians is thicker with more compact cuticle cells than that in Caucasians. Asian hair …
>>>
Asian hair is known for its straightness, dark pigmentation, and large diameter. The cuticle layer in Asians is thicker with more compact cuticle cells than that in Caucasians. Asian hair generally exhibits the strongest mechanical properties, and its cross-sectional area is determined greatly by genetic variations, particularly from the gene. However, knowledge on Asian hair remains unclear with limited studies. This article aimed to review and summarize the characteristics and properties of Asian hair. It also aimed to discuss hair disorders including linear lupus panniculitis and pseudocyst of the scalp that occur distinctively in Asian populations.
<<<
翻译
20.
钟鸣
(2023-04-28 17:27):
#paper doi:10.3390/ph16030328 Chemical Composition and Antimicrobial Potential of a Plant-Based Substance for the Treatment of Seborrheic Dermatitis
脂溢性皮炎 (SD) 是最常见的头皮皮肤病,全世界高达 50% 的成年人都会发生。SD的发生与多种因素有关,但确切的发病机制仍未阐明。目前对SD的治疗以抗真菌和抗炎为主,但长期使用这类药物不仅有引起副作用的风险,真菌耐药性的诱导也是不可忽视的风险之一,为此作者将目光投向了植物源药物,即本文中的互叶白千层叶油(TTO)。作者首先使用GS/MS分析了成分,确定了 TTO 特有的 10 种抗菌单萜和倍半萜以及以前未在 TTO 中检测到的 7 种新萜。随后的抑菌试验和抗真菌实验表明这种物质的抗菌活性与苯扎氯铵、酮康唑和氯咪唑相当;因此,该物质有望用于进一步研究和评估可能用于治疗 SD 的药物开发。
Abstract:
Seborrheic dermatitis (SD) is the most prevalent dermatological disease, occurring in up to 50% of newborns, children, and adults around the world. The antibacterial and antifungal resistance contributed to the …
>>>
Seborrheic dermatitis (SD) is the most prevalent dermatological disease, occurring in up to 50% of newborns, children, and adults around the world. The antibacterial and antifungal resistance contributed to the search for new natural substances and the development of a novel substance based on () leaf oil (TTO), 1,8-cineole (eucalyptol), and α-(-)-bisabolol. Thus, this work aimed to determine the chemical composition of the novel plant-based substance and to evaluate its antimicrobial activity against standard microorganisms involved in the pathogenesis of SD. Moreover, the chemical composition of the substance was analyzed by gas chromatography coupled with mass spectrometry (GC/MS). (), (), (), and () were used for antimicrobial and antifungal assays by means of the broth microdilution method to determine the minimal inhibitory concentration (MIC). Finally, the substance's ability to inhibit () was evaluated. Eighteen compounds from different chemical groups were identified by GC/MS. The major biologically active compounds of the substance were terpinen-4-ol (20.88%), 1,8-cineole (22.28%), (-)-α-bisabolol (25.73%), and o-cymene (8.16%). The results showed that the substance has a synergistic antimicrobial and antifungal activity, while and strains were the most susceptible. Furthermore, the substance inhibited , which is a main pathogen involved in the pathogenesis of SD and clinical manifestations. It can be concluded that the novel plant-based substance has a promising potential against and scalp commensal bacteria and may be helpful for the development of new drugs for treatment of dandruff and SD.
<<<
翻译