来自杂志 PLOS Biology 的文献。
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1.
钟鸣 (2024-08-30 20:53):
#paper doi:10.1371/journal.pbio.3002771 A taxon-restricted duplicate of Iroquois3 is required for patterning the spider waist 蜘蛛有极其纤细的腰,其形成机制在发育生物学中引人注目但仍未阐明,这里作者使用RNA测序的方法发现了一个此前没有被注意到的基因,无腰基因。作者选择了个体较大容易解剖的蜘蛛,狼蛛。在其不同的发育阶段,对不同部位进行了解剖并分别建库测序。随后分析在不同发育阶段和不同部位(前体后体)中表达趋势明显变化的基因。通过更换筛选策略并结合RNA沉默技术进行功能验证。最后还结合原位杂交技术,观察了沉默无腰基因后的胚胎的形态学变化。
Abstract:
The chelicerate body plan is distinguished from other arthropod groups by its division of segments into 2 tagmata: the anterior prosoma (“cephalothorax”) and the posterior opisthosoma (“abdomen”). Little is understood … >>>
The chelicerate body plan is distinguished from other arthropod groups by its division of segments into 2 tagmata: the anterior prosoma (“cephalothorax”) and the posterior opisthosoma (“abdomen”). Little is understood about the genetic mechanisms that establish the prosomal-opisthosomal (PO) boundary. To discover these mechanisms, we created high-quality genomic resources for the large-bodied spider Aphonopelma hentzi. We sequenced specific territories along the antero-posterior axis of developing embryos and applied differential gene expression analyses to identify putative regulators of regional identity. After bioinformatic screening for candidate genes that were consistently highly expressed in only 1 tagma (either the prosoma or the opisthosoma), we validated the function of highly ranked candidates in the tractable spider model Parasteatoda tepidariorum. Here, we show that an arthropod homolog of the Iroquois complex of homeobox genes is required for proper formation of the boundary between arachnid tagmata. The function of this homolog had not been previously characterized, because it was lost in the common ancestor of Pancrustacea, precluding its investigation in well-studied insect model organisms. Knockdown of the spider copy of this gene, which we designate as waist-less, in P. tepidariorum resulted in embryos with defects in the PO boundary, incurring discontinuous spider germ bands. We show that waist-less is required for proper specification of the segments that span the prosoma-opisthosoma boundary, which in adult spiders corresponds to the narrowed pedicel. Our results demonstrate the requirement of an ancient, taxon-restricted paralog for the establishment of the tagmatic boundary that defines Chelicerata. <<<
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2.
庞庞 (2023-06-30 13:59):
#paper Performing group-level functional image analyses based on homologous functional regions mapped in individuals https://doi.org/10.1371/journal.pbio.2007032 大脑功能区域的大小、形状、位置和连接模式在个体之间可能存在巨大差异。 虽然功能组织的个体间差异已得到广泛认可,但迄今为止,功能神经影像研究的标准程序仍然依赖于将不同受试者的数据与基于整体大脑形态的名义“平均”大脑进行对齐。 研究者开发了一种方法来可靠地识别每个个体的同源功能区域,并证明基于这些同源功能区域对齐数据可以显着改善静息状态功能连接、任务功能磁共振成像激活和大脑行为关联的研究。 此外,我们发现大脑功能区域的大小、位置和连接性方面的个体差异是可分离的。
Abstract:
Functional MRI (fMRI) studies have traditionally relied on intersubject normalization based on global brain morphology, which cannot establish proper functional correspondence between subjects due to substantial intersubject variability in functional … >>>
Functional MRI (fMRI) studies have traditionally relied on intersubject normalization based on global brain morphology, which cannot establish proper functional correspondence between subjects due to substantial intersubject variability in functional organization. Here, we reliably identified a set of discrete, homologous functional regions in individuals to improve intersubject alignment of fMRI data. These functional regions demonstrated marked intersubject variability in size, position, and connectivity. We found that previously reported intersubject variability in functional connectivity maps could be partially explained by variability in size and position of the functional regions. Importantly, individual differences in network topography are associated with individual differences in task-evoked activations, suggesting that these individually specified regions may serve as the "localizer" to improve the alignment of task-fMRI data. We demonstrated that aligning task-fMRI data using the regions derived from resting state fMRI may lead to increased statistical power of task-fMRI analyses. In addition, resting state functional connectivity among these homologous regions is able to capture the idiosyncrasies of subjects and better predict fluid intelligence (gF) than connectivity measures derived from group-level brain atlases. Critically, we showed that not only the connectivity but also the size and position of functional regions are related to human behavior. Collectively, these findings suggest that identifying homologous functional regions across individuals can benefit a wide range of studies in the investigation of connectivity, task activation, and brain-behavior associations. <<<
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