当前共找到 30 篇文献分享,本页显示第 21 - 30 篇。
21.
孤舟蓑笠翁
(2025-06-15 09:44):
#paper 【doi】10.1038/s41591-025-03562-5;【发表年份】2025年;【期刊】Nature Medicine;【标题】Prospective, multicenter validation of a platform for rapid molecular profiling of central nervous system tumors。【内容总结】研究人员想开发一个又快又准的方法来诊断脑肿瘤,因为现有技术太慢太贵,尤其在全球资源有限的地方不好用,所以他们搞了个叫Rapid-CNS2的新工具,结合纳米孔测序和自适应采样技术,能在手术中30分钟内给出肿瘤的大致分类和基因拷贝数信息,24小时内提供完整的分子报告,包括突变、融合和甲基化数据,还搭配了一个叫MNP-Flex的智能分类器处理甲基化信息;他们在多个医院测试了301个肿瘤样本,结果超级好——甲基化家族分类准确率92.9%,基因突变检测与常规方法91.67%一致,拷贝数分析与金标准完全匹配,MNP-Flex更牛,家族和子类准确率分别达99.6%和99.2%,术中测试15分钟就搞定83%的样本,整体诊断时间从几周缩到40小时,让医生能更快制定个性化治疗方案。
22.
惊鸿
(2025-06-13 23:47):
#paper
Nature
Pub Date : 2025-06-11
DOI : 10.1038/d41586-025-01453-w
Computer processors built from 2D materials
2025年6月《自然》期刊报道的两项独立研究(Ghosh等和Ao等)首次实现了基于二维材料的完整计算机处理器原型。Ghosh团队构建了约1000个二硫化钼晶体管的单指令集芯片,Ao团队则集成了约2500个二维晶体管制成兼容RISC-V架构的32位微处理器。这两项突破验证了二维材料(如过渡金属硫化物)在系统级集成电路中的可行性,其核心价值在于:二维材料的原子级厚度(约0.7纳米)可突破硅基晶体管在10纳米尺度以下性能衰减的物理限制。
然而,当前技术仍面临三重挑战:一是材料缺陷导致器件均一性不足,实验室原型良率远低于商用硅芯片;二是制造工艺不兼容现有半导体产线,需开发全新的二维材料晶圆级集成技术;三是载流子迁移率等关键性能参数仍需优化。研究团队通过创新设计(如Ao采用双栅结构提升稳定性)部分缓解了这些问题,但距离产业化尚有距离。
从技术演进角度看,这两项工作标志着二维电子学从器件研究迈向系统集成的重要转折点。短期看,二维材料可能作为硅基芯片的补充模块(如特定低功耗单元);长期若突破规模化瓶颈,或将为后摩尔时代提供新的技术路径。其科学意义在于实证了原子级薄层材料承载复杂计算架构的能力,为纳米尺度电子器件发展提供了关键数据支撑。
Nature,
2025-6-12.
DOI: 10.1038/d41586-025-01453-w
Abstract:
No abstract available.
23.
孤舟蓑笠翁
(2025-06-13 20:26):
#paper 【doi】10.1038/s41591-025-03692-w;【发表年份】2025年;【期刊】Nature Medicine;【标题】T and B cell responses against Epstein-Barr virus in primary sclerosing cholangitis。该研究简略地探讨了EB病毒(EBV)与原发性硬化性胆管炎(PSC)的免疫关联,发现PSC患者的T/B细胞对EBV反应异常增强。具体通过比较504名PSC患者和904名健康人的T细胞受体(TCR)测序,鉴定出1008个PSC相关克隆型,其中多数靶向EBV抗原(如BZLF1和EBNA3),且受PSC风险HLA等位基因(如HLA-B*08:01)限制;通过噬菌体免疫沉淀测序(PhIP-seq)分析120名PSC和202名健康人血清,显示PSC患者抗EBV抗体反应显著升高(尤其靶向BMRF1等裂解期蛋白);从PSC肝脏浸润B细胞提取的单克隆抗体也证实靶向EBV抗原(如BFRF3);最后通过超116万人电子病历分析,发现传染性单核细胞增多症(EBV引起)患者患PSC风险比健康人高12倍(95% CI: 6.3-22.9),远高于其他免疫疾病(如克罗恩病),表明EBV感染与PSC发病存在强流行病学关联,提示EBV再激活可能在PSC病理中起关键作用。
Nature Medicine,
2025-6-11.
DOI: 10.1038/s41591-025-03692-w
Abstract:
Abstract Primary sclerosing cholangitis (PSC) is an idiopathic, progressive and incurable liver disease. Here, we aimed for systematic analyses of adaptive immune responses in PSC. By profiling the T cell …
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Abstract Primary sclerosing cholangitis (PSC) is an idiopathic, progressive and incurable liver disease. Here, we aimed for systematic analyses of adaptive immune responses in PSC. By profiling the T cell repertoires of 504 individuals with PSC and 904 healthy controls, we identified 1,008 clonotypes associated with PSC. A substantial fraction of these clonotypes was restricted to known PSC human leukocyte antigen susceptibility alleles and known to target Epstein–Barr virus (EBV) epitopes. We further utilized phage-immunoprecipitation sequencing to determine antibody epitope repertoires of 120 individuals with PSC and 202 healthy controls, which showed a higher burden of anti-EBV responses in PSC than controls. EBV-specific monoclonal antibodies isolated from B cells in PSC livers corroborated convergent B and T cell responses against EBV. By analyzing electronic health records of >116 million people, we identified an association between infectious mononucleosis and PSC (odds ratio, 12; 95% confidence interval, 6.3–22.9), suggesting a link between EBV and PSC.
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24.
孤舟蓑笠翁
(2025-06-12 11:26):
#paper 【doi】10.1016/j.cell.2025.05.019;【发表年份】2025年;【期刊】Cell;【标题】MT-125 inhibits non-muscle myosin IIA and IIB and prolongs survival in glioblastoma。这项研究的目标是开发一种新药MT-125来治疗致命的胶质母细胞瘤(GBM),因为GBM是最具侵袭性的脑肿瘤,当前的治疗效果有限,而MT-125通过特异性地抑制非肌肉肌球蛋白IIA和IIB(NMIIA和NMIIB),这两种蛋白在肿瘤细胞运动、分裂和信号传递中起关键作用,从而阻断肿瘤生长。在方法上,研究人员首先设计了MT-125作为已知抑制剂blebbistatin的衍生物,通过生化实验验证它对NMIIA和NMIIB的高选择性(如抑制常数测定),并评估了其药代动力学、脑渗透性和安全性(包括动物毒性测试);在体外实验中,测试了MT-125对GBM细胞侵袭、细胞分裂的影响(如Transwell入侵实验和细胞核多核化分析),以及它如何增加活性氧(ROS)水平和诱导铁死亡;在体内实验中,使用小鼠GBM模型(包括基因工程模型和患者来源的异种移植模型),给予MT-125单药或与放疗或激酶抑制剂(如sunitinib或paxalisib)联合治疗,监测生存期和肿瘤变化。结果显示,MT-125有效抑制肿瘤细胞侵袭和细胞分裂,导致多核化(如48小时后12%-25%细胞出现多核),并增加ROS和铁死亡,显著延长小鼠生存期(如单药治疗使中位生存期提高);更详细地,MT-125表现出良好的安全性和治疗指数(如耐受剂量高达30 mg/kg),与放疗结合时通过ROS机制增强DNA损伤和细胞死亡,与PDGFR抑制剂sunitinib或mTOR抑制剂联合时产生强协同效应,在动物模型中生存期翻倍,部分小鼠实现长期缓解,这为GBM治疗提供了新的临床策略。
25.
林海onrush
(2025-06-07 13:27):
#paper, Token-Importance Guided Direct Preference Optimization,DOI: https://arxiv.org/abs/2505.19653, share一下个人最新的大模型微调算法工作,我们针对大语言模型(LLMs)如何更好地对齐人类偏好提出了一种新方法——TI-DPO。以往常用的DPO(直接偏好优化)方法虽然省去了显式奖励模型,直接用人类偏好数据优化模型,但忽略了不同token(词/字)在生成内容中的重要性差异,这可能导致模型在关键token上犯错,从而产生不符合人类价值观的输出。
TI-DPO通过两大创新点解决了这一问题:
1. 在token level层面引入基于梯度归因的Token重要性权重,能动态识别和优先优化对人类偏好最关键的token;
2. 加入基于对比学习的Triplet(三元组)损失,不仅区分“好-坏”样本,还引入“中间”输出,使优化更细致,有助于模型生成更接近人类期望、远离不理想响应的内容。
实验表明,TI-DPO在多个任务上(如TruthfulQA、IFEval等)表现优异,准确率和生成多样性均超过DPO及其他对齐方法。消融实验进一步验证了token-importance机制和triplet loss的必要性和有效性。理论分析还证明了TI-DPO在优化上拥有更严格的损失下界,训练过程更加稳定。TI-DPO通过精细化地关注关键token,并结合三元组对齐结构,有效提升了大模型的对齐能力与输出质量,为人机交互中的AI安全和有用性提供了新的解决方案。
arXiv,
2025-05-26T08:11:24Z.
DOI: 10.48550/arXiv.2505.19653
Abstract:
Ensuring that large language models (LLMs) generate outputs aligned withhuman preferences is important for safe and effective AI interactions. WhileDirect Preference Optimization (DPO) employs an implicit reward function tooptimize the …
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Ensuring that large language models (LLMs) generate outputs aligned withhuman preferences is important for safe and effective AI interactions. WhileDirect Preference Optimization (DPO) employs an implicit reward function tooptimize the policy model, however, it and its related variants overlook thedifferential importance of individual tokens and are sensitive to judgmentnoise in preference datasets during generation. Although recent methods attemptto assess the important weight of tokens via probability prediction orsimplistic weighting schemes, these evaluation methods are prone to biases andstill cannot fully address these issues. To solve this problem, we propose theToken-Importance Guided Direct Preference Optimization (TI-DPO), whichintroduces two key innovations: the gradient-based token-importance weightsthat dynamically prioritize critical tokens, and a triple loss that explicitlyguides model outputs to approach human-preferred responses and stay away fromnon-preferred responses. Experimental results show that TI-DPO achieves higheraccuracy and stronger generative diversity, providing more stable andcomputationally efficient solutions compared with DPO and other RLHF methods.
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26.
少颖-focus reverse aging
(2025-06-06 14:30):
#paper Socioeconomic Status and Cardiovascular Outcomes: Challenges and Interventions doi: 10.1161/CIRCULATIONAHA.117.029652 推荐原因:能学到一些规避心血管病的方法; 论文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5958918 论文重点内容:穷人更容易得心血管病,原因:
1.没钱买优质食物,便宜的食物通常高油高盐;
2.没条件运动,没公园没健身房;
3.没钱体检和买药;
4.压力大长期压抑;
5.保养意识健康意识差;
6. 穷人区环境污染大。
Circulation,
2018-5-15.
DOI: 10.1161/CIRCULATIONAHA.117.029652
Abstract:
Socioeconomic status (SES) has a measurable and significant effect on cardiovascular health. Biological, behavioral, and psychosocial risk factors prevalent in disadvantaged individuals accentuate the link between SES and cardiovascular disease …
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Socioeconomic status (SES) has a measurable and significant effect on cardiovascular health. Biological, behavioral, and psychosocial risk factors prevalent in disadvantaged individuals accentuate the link between SES and cardiovascular disease (CVD). Four measures have been consistently associated with CVD in high-income countries: income level, educational attainment, employment status, and neighborhood socioeconomic factors. In addition, disparities based on sex have been shown in several studies. Interventions targeting patients with low SES have predominantly focused on modification of traditional CVD risk factors. Promising approaches are emerging that can be implemented on an individual, community, or population basis to reduce disparities in outcomes. Structured physical activity has demonstrated effectiveness in low-SES populations, and geomapping may be used to identify targets for large-scale programs. Task shifting, the redistribution of healthcare management from physician to nonphysician providers in an effort to improve access to health care, may have a role in select areas. Integration of SES into the traditional CVD risk prediction models may allow improved management of individuals with high risk, but cultural and regional differences in SES make generalized implementation challenging. Future research is required to better understand the underlying mechanisms of CVD risk that affect individuals of low SES and to determine effective interventions for patients with high risk. We review the current state of knowledge on the impact of SES on the incidence, treatment, and outcomes of CVD in high-income societies and suggest future research directions aimed at the elimination of these adverse factors, and the integration of measures of SES into the customization of cardiovascular treatment.
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27.
刘昊辰
(2025-06-03 16:34):
#paper AlphaZero-Edu Making AlphaZero Accessible to Everyone. AlphaZero-Edu 是基于 AlphaZero 数学框架开发的轻量化强化学习框架,专为教育场景和五子棋设计,具有模块化架构(解耦蒙特卡洛树搜索、自我对弈训练、策略价值网络)、资源高效训练(单块 NVIDIA RTX 3090 GPU 即可运行)和高度并行自我对弈数据生成(8 进程实现 3.2 倍加速)等特点。其状态特征采用 21 层张量(含当前状态和 20 层历史状态),输出包含策略概率分布和价值评估标量,并通过旋转 / 翻转数据增强提升泛化能力。训练中结合循环学习率调度器,使策略损失和价值损失均收敛,且在与 4 名人类玩家的对战中实现最高 100% 胜率,最低 60% 胜率(含 20% 平局)。该框架已开源,为学术研究和工业应用提供了可访问的基准。下载地址:https://arxiv.org/pdf/2504.14636
arXiv,
2025-04-20T14:29:39Z.
DOI: 10.48550/arXiv.2504.14636
Abstract:
Recent years have witnessed significant progress in reinforcement learning,especially with Zero-like paradigms, which have greatly boosted thegeneralization and reasoning abilities of large-scale language models.Nevertheless, existing frameworks are often plagued by …
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Recent years have witnessed significant progress in reinforcement learning,especially with Zero-like paradigms, which have greatly boosted thegeneralization and reasoning abilities of large-scale language models.Nevertheless, existing frameworks are often plagued by high implementationcomplexity and poor reproducibility. To tackle these challenges, we presentAlphaZero-Edu, a lightweight, education-focused implementation built upon themathematical framework of AlphaZero. It boasts a modular architecture thatdisentangles key components, enabling transparent visualization of thealgorithmic processes. Additionally, it is optimized for resource-efficienttraining on a single NVIDIA RTX 3090 GPU and features highly parallelizedself-play data generation, achieving a 3.2-fold speedup with 8 processes. InGomoku matches, the framework has demonstrated exceptional performance,achieving a consistently high win rate against human opponents. AlphaZero-Eduhas been open-sourced at https://github.com/StarLight1212/AlphaZero_Edu,providing an accessible and practical benchmark for both academic research andindustrial applications.
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28.
少颖-focus reverse aging
(2025-06-02 00:22):
#paper Cardiovascular aging: from cellular and molecular changes to therapeutic interventions doi: 10.20517/jca.2023.09 论文网址:https://pmc.ncbi.nlm.nih.gov/articles/PMC10238104/#S16 公众号阅读笔记链接:https://mp.weixin.qq.com/s/O9IqSEJpAwSGIlaAMap3mQ
Abstract:
Progressive age-induced deterioration in the structure and function of the cardiovascular system involves cardiac hypertrophy, diastolic dysfunction, myocardial fibrosis, arterial stiffness, and endothelial dysfunction. These changes are driven by complex …
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Progressive age-induced deterioration in the structure and function of the cardiovascular system involves cardiac hypertrophy, diastolic dysfunction, myocardial fibrosis, arterial stiffness, and endothelial dysfunction. These changes are driven by complex processes that are interconnected, such as oxidative stress, mitochondrial dysfunction, autophagy, inflammation, fibrosis, and telomere dysfunction. In recent years, the advances in research of cardiovascular aging, including the wide use of animal models of cardiovascular aging, elucidated an abundance of cell signaling pathways involved in these processes and brought into sight possible interventions, which span from pharmacological agents, such as metformin, sodium-glucose cotransporter 2-inhibitors, rapamycin, dasatinib and quercetin, to lifestyle changes.
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29.
DeDe宝
(2025-06-01 17:15):
#paper https://doi.org/10.1101/2024.07.02.601741 bioRxiv.2025. 3D directional tuning in the orofacial sensorimotor cortex during natural feeding and drinking
这篇文献研究了在自然摄食和饮水行为中,口腔面部感觉运动皮层(OSMCx)对舌头三维方向的编码特性,以及口腔触觉感觉丧失对这些编码特性的影响。实验对象为两只成年雄性恒河猴,实验任务分为摄食任务和饮水任务,目标脑区是OSMCx(OSMCx是大脑皮层中负责口腔面部感觉和运动功能的区域,包括初级运动皮层(MIo)、初级体感皮层(SIo)和皮层咀嚼区(CMA))。为了研究感觉反馈在控制舌头运动中的作用,研究者使用局部注射布比卡因(Bupivacaine HCL)和肾上腺素(Epinephrine)混合液,阻断三叉神经的感觉分支,以消除口腔触觉感觉。研究者在猴子的颅骨、下颌骨和舌头上植入直径为1毫米的钽珠,用于标记,并使用双平面视频放射照相术(biplanar videoradiography)以200 Hz的频率记录标记物的三维位置数据。同时,通过慢性植入的微电极阵列记录OSMCx中初级运动皮层(MIo)和初级体感皮层(SIo)的神经元放电活动。
实验结果表明,在摄食和饮水任务中,大多数MIo和SIo神经元表现出对三维舌运动方向的调谐,其中MIo神经元的方向调谐更为显著(尤其是在摄食任务中)。感觉神经阻断后,MIo和SIo中方向调谐的神经元比例显著下降,表明触觉反馈在控制舌运动方向中起着关键作用。。
bioRxiv,
2025-4-24.
DOI: 10.1101/2024.07.02.601741
Abstract:
AbstractDirectional tongue movements are crucial for feeding and speech, ensuring proper food positioning for chewing and swallowing, as well as accurate sound production. While directional tuning in the arm region …
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AbstractDirectional tongue movements are crucial for feeding and speech, ensuring proper food positioning for chewing and swallowing, as well as accurate sound production. While directional tuning in the arm region of the sensorimotor cortex during reaching tasks is well-studied, little is known about how 3D tongue direction is encoded in the orofacial sensorimotor cortex (OSMCx) during natural behaviors. Understanding this neural representation has important implications for rehabilitating individuals with orolingual dysfunctions. This study examines the directional tuning and population dynamics in OSMCx during naturalistic feeding and drinking, and how these are affected by sensory loss. Using biplanar videoradiography, we tracked implanted tongue markers in behaving rhesus macaques (Macaca mulatta) and simultaneously recorded 3D positional data with spiking activity from chronically implanted microelectrode arrays in primary motor (MIo) and somatosensory (SIo) areas of the orofacial cortex. In some sessions, tasks were preceded by bilateral nerve block injections to the sensory branches of the trigeminal nerve. Modulation to 3D tongue direction during feeding and drinking was found in most MIo and SIo neurons. Directional information in both individual- and population-level was higher in feeding and was more robust in MIo. Following sensory loss, alterations in tongue kinematics were accompanied by changes in directional information in MIo and SIo, manifesting as modifications in both individual neuron tuning characteristics and the broader dynamics of population-level neural activity. Overall, this study advances our understanding of how OSMCx contributes to complex, coordinated control of naturalistic tongue movements. It expands our current knowledge of orofacial control to three dimensions and demonstrates the specificity and adaptability of population activity in MIo and SIo in response to different behavioral contexts.
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30.
龙海晨
(2025-06-01 11:58):
#paper Xu Y, Lan F, Bi Q, Li X, Wang Z, Li Y, Li P, Long H, Du L. Comprehensive analysis of the prognosis and tumor immune microenvironment of ubiquitin-conjugating enzyme transport-related gene UBE2C in hepatocellular carcinoma. Discov Oncol. 2025 May 23;16(1):884. doi: 10.1007/s12672-025-02675-0. PMID: 40410642; PMCID: PMC12102447.这是我发的第一篇纯生物信息的sci,是研究肝细胞癌中泛素结合酶E2 C(UBE2C)预后意义和肿瘤免疫反应的机制的。研究发现细胞周期相关蛋白与UBE2C基因表达之间存在很高的相关性,肝癌样品中的UBE2C基因表达水平明显高于正常样本,UBE2C表达高的肝癌患者的存活率低于低表达患者。高表达的UBE2C基因与免疫抑制分子数量增加有关。 以上研究结果因为实验条件的限制,基于纯生信分析,未能进行分子生物学实验有一定的局限性。