来自用户 龙海晨 的文献。
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21.
龙海晨
(2023-06-25 00:06):
#paper Haichen Long, Yangyang Li, Huijuan Wang, Bingxuan Guo, Shuyan Song, Xiangyi Zhe, Hongtao Li, Dongmei Li, Renfu Shao, Zemin Pan . C/EBPβ expression decreases in cervical cancer and leads to tumorigenesis. BMC Cancer. 2023 Jan 24;23(1):79. doi: 10.1186/s12885-023-10543-9. PMID: 36694148; PMCID: PMC9872280. 这是我第一次作为第一作者在中科院Top期刊上发的文章,也是2023年发的第二篇文章。是群里分享的第三篇我作为作者的文章。目的是研究C/EBPβ蛋白在宫颈肿瘤发生和发展中的作用。整个过程中,我们采用定量RT-PCR分析临床标本(10例宫颈癌组织标本和10例相应正常宫颈组织标本)中C/EBPβ、miR-661和MTA1 mRNA的表达。应用免疫组织化学方法分析381例临床标本C/EBPβ、80例临床标本Ki67和60例临床标本PCNA蛋白的表达。采用MALDI-TOF MassARRAY分析C/EBPβ基因甲基化(13例宫颈癌症组织和13例相应的正常宫颈组织)。采用CCK-8分析宫颈癌症细胞系的细胞增殖情况。采用蛋白质印迹和免疫组织化学方法检测C/EBPβ蛋白的表达水平,并用定量RT-PCR分析mRNA的表达。采用流式细胞术检测细胞周期分布和细胞凋亡。进行集落形成、Transwell、细胞侵袭和伤口愈合测定以检测细胞迁移和侵袭。
通过实验,我们证明了,C/EBPβ在宫颈癌症组织中降低,C/EBP-β基因在宫颈癌症细胞中的过度表达可以抑制增殖、侵袭和迁移。
Abstract:
BACKGROUND: Cervical cancer is currently estimated to be the fourth most common cancer among women worldwide and the leading cause of cancer-related deaths in some of the world's poorest countries. …
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BACKGROUND: Cervical cancer is currently estimated to be the fourth most common cancer among women worldwide and the leading cause of cancer-related deaths in some of the world's poorest countries. C/EBPβ has tumor suppressor effects because it is necessary for oncogene-induced senescence. However, C/EBPβ also has an oncogenic role. The specific role of C/EBPβ in cervical cancer as a tumor suppressor or oncoprotein is unclear.OBJECTIVE: To explore the role of the C/EBPβ protein in cervical tumorigenesis and progression.METHODS: Quantitative RT-PCR was used to analyze C/EBPβ (15 cervical cancer tissue samples and 15 corresponding normal cervical tissue samples), miR-661, and MTA1 mRNA expression in clinical samples (10 cervical cancer tissue samples and 10 corresponding normal cervical tissue samples). Immunohistochemistry was used to analyze C/EBPβ (381 clinical samples), Ki67 (80 clinical samples) and PCNA ( 60 clinical samples) protein expression. MALDI-TOF MassARRAY was used to analyze C/EBPβ gene methylation (13 cervical cancer tissues and 13 corresponding normal cervical tissues). Cell proliferation was analyzed by CCK-8 in cervical cancer cell lines. Western blotting and immunohistochemistry were performed to detect C/EBPβ protein expression levels, and mRNA expression was analyzed by quantitative RT-PCR analysis. Flow cytometry was performed to measure cell cycle distribution and cell apoptosis. Colony formation, Transwell, cell invasion, and wound healing assays were performed to detect cell migration and invasion.RESULTS: C/EBPβ protein expression was significantly reduced in cervical cancer tissues compared with cervicitis tissues (P < 0.01). Ki67 protein and PCNA protein expression levels were significantly higher in cervical cancer tissues compared with cervicitis tissues. The rate of C/EBPβ gene promoter methylation of CpG12, 13, 14 and CpG19 in cervical cancer tissues was significantly increased compared with normal cervical tissue (P < 0.05). In addition, C/EBPβ was overexpressed in cervical cancer cells and this overexpression inhibited cell proliferation, migration, invasion, arrested cells in S phase, and promoted apoptosis.CONCLUSIONS: We have demonstrated that C/EBPβ decreased in cervical cancer tissues and overexpression of the C/EBPβ gene in cervical cancer cells could inhibit proliferation, invasion and migration.
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22.
龙海晨
(2023-06-24 23:55):
#paper Weinan Zheng, Fuyuan Jin, Fang Wang, Luyue Wang, Shaowei Fu, Zemin Pan, Haichen Long. Analysis of eEF1A2 gene expression and copy number in cervical carcinoma. Medicine (Baltimore). 2023 Jan 13;102(2):e32559. doi: 10.1097/MD.0000000000032559. PMID: 36637958; PMCID: PMC9839279. 这是我第一次作为独立通讯作者发的文章也是2023年发的第一篇文章。是群里分享的第二篇我作为作者的文章。因为是阴性结果,没有发到太好的杂志。杂志要求补实验数据时,赶上疫情,封在家里,所以用生物信息学补的。这是一篇分子生物学和生物信息学相结合的文章。主要研究eEF1A2基因拷贝数与宫颈癌患者临床分期、病理分级和患者生存率之间的关系。QPCR分析样本拷贝数。生物信息学数据库分析相关数据。发现,eEF1A2基因在癌症组织中发生突变。eEF1A2基因拷贝数与子宫颈癌症组织中eEF1A1基因表达的变化无关。
Abstract:
OBJECTIVE: To explore and analyze the expression of eukaryotic translation elongation factor 1 alpha 2 (eEF1A2) gene in cervical cancer tissues, its relationship with patient survival, gene mutations, and changes …
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OBJECTIVE: To explore and analyze the expression of eukaryotic translation elongation factor 1 alpha 2 (eEF1A2) gene in cervical cancer tissues, its relationship with patient survival, gene mutations, and changes in copy number in cervical cancer and chronic cervicitis tissues.METHODS: The expression of the eEF1A2 gene in cervical cancer and its relationship with patient survival were analyzed using gene expression profile interactive analysis. Changes in eEF1A2 expression in cervical cancer tissues were analyzed using cBioPortal, a portal for cancer genomics analysis. The eEF1A2 copy number in cervical cancer tissues and chronic cervicitis tissues was determined by real-time fluorescence quantitative polymerase chain reaction. The relationship between the expression of eEF1A2 protein and the clinical stage, pathological grade, and patient survival of cervical cancer was analyzed by the database: The Human Protein Atlas, an integrated repository portal for tumor-immune system interactions.RESULTS: Gene expression profile interactive analysis database analysis showed no significant differences in the expression of eEF1A2 between cervical cancer and normal cervical tissues (P > .05). The eEF1A2 gene expression level was not correlated with the survival of cervical cancer patients (P > .05). Analysis of the cBioPortal database showed that 18 of 297 cervical cancer patients had eEF1A2 gene changes, including missense mutation, splice mutation, amplification, and messenger RNA increase. There was no significant difference in eEF1A2 gene copy number between cervical cancer and chronic cervicitis (P > .05). The Human Protein Atlas and an integrated repository portal for tumor-immune system interactions database analysis of immunohistochemical data showed that eEF1A2 protein expression was no significant difference in clinical stage, pathological grade and patient survival of cervical cancer (P > .05).CONCLUSION: The eEF1A2 gene was mutated in cervical cancer tissues. The eEF1A2 gene copy number was not associated with changes in the expression of the eEF1A2 gene in cervical cancer tissues.
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23.
龙海晨
(2023-05-23 02:52):
#paper Sun M, Ji H, Xu N, Jiang P, Qu T, Li Y. Real-world data analysis of immune checkpoint inhibitors in stage III-IV adenocarcinoma and squamous cell carcinoma. BMC Cancer. 2022 Jul 13;22(1):762. doi: 10.1186/s12885-022-09843-3. PMID: 35831785; PMCID: PMC9277844.
文章对肺癌的鳞癌和腺癌患者接受免疫检查抑制治疗immune checkpoint inhibitors (ICIs)进行回顾性研究,评估ICIs的疗效和安全性。发现,ICIs对癌症患者有良好的疗效,并显著改善ORR和PFS。objective response rate (ORR) ,客观缓解率,是一种直接衡量药物抗肿瘤活性的指标,ORR反应了肿瘤药物治疗后,肿瘤缩小或被消灭的概率。无进展生存期(progression free survival,PFS)这个名词通常用在中晚期癌症,肿瘤侵犯范围比较大,或是发生转移的病人。病人的治疗目的是控制癌细胞生长不要继续恶化,改善病人的生活品质及延长生命。例如,4期肺癌病人接受标靶药物治疗,一年无进展生存期几率是30%,表示开始治疗追踪一年后,有3成的病人能够控制住肺癌。
Abstract:
BACKGROUND: This study was designed to investigate the clinical application, efficacy, and safety of immune checkpoint inhibitors (ICIs) in the treatment of lung cancer in the real world.METHODS: A retrospective, …
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BACKGROUND: This study was designed to investigate the clinical application, efficacy, and safety of immune checkpoint inhibitors (ICIs) in the treatment of lung cancer in the real world.METHODS: A retrospective, observational analysis was conducted on patients treated with ICIs in four tertiary hospitals in the region from January 2015 to March 2021, to evaluate the clinical efficacy of ICIs single-agent or combined chemotherapy and anti-vascular drugs in the first-line or second-line treatment of patients with lung cancer.RESULTS: Three hundred and fifteen patients were enrolled in this study. In patients with stage III-IV adenocarcinoma and Squamous cell carcinoma, the objective response rate (ORR) and disease control rate (DCR) were 35.5% (87/245) and 93.5% (229/245), respectively, the median progression-free survival (PFS) was 10.8 months, and the median overall survival (OS) was not reached. A total of 132 patients received ICIs as the first-line treatment, the median treatment cycle was 8 cycles (2-20 cycles), the short-term efficacy ORR was 38.6%, DCR was 93.9%, and the median PFS was 11.4 months. One hundred thirteen patients received ICIs treatment as second-line treatment, the median treatment cycle was five cycles (2-10 cycles), the short-term efficacy ORR was 31.9%, DCR was 92.9%, and the median PFS was 10.0 months. There were no statistically significant differences in ORR, DCR, or median PFS with ICIs as the first-line treatment compared with the second-line treatment(P > 0.05). The results of subgroup analysis showed that Eastern Cooperative Oncology Group performance status (ECOG PS), epidermal growth factor receptor (EGFR) mutation status, pathological type and number of treatment lines were not correlated with median PFS(P > 0.05). However, there were statistically significant differences in programmed death-ligand 1(PD-L1) expression, corticosteroid interference, and antibiotic (Abx) treatment among all groups (P < 0.05). In terms of safety, the overall incidence of adverse reactions in 315 patients was 62.5%, and the incidence of immune-related adverse events (irAEs) was 13.7%. Grade 1-2 and 3-4 incidence of adverse events were 34.9 and 27.65%, respectively. There were four patients who experienced fatal irAEs, two cases were liver damage leading to liver failure, one case was immune related pneumonia, and one case was immune related myocarditis.CONCLUSION: In the real world, ICIs has a good effect on patients with lung cancer and significantly improves ORR and PFS.
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24.
龙海晨
(2023-04-10 13:25):
#paper Toama W, Wiederin J, Shanley R, Jewett P, Gu C, Shenoy C, Nijjar PS, Blaes AH. Impact of pectoralis muscle loss on cardiac outcome and survival in Cancer patients who received anthracycline based chemotherapy: retrospective study. BMC Cancer. 2022 Jul 13;22(1):763. doi: 10.1186/s12885-022-09882-w. PMID: 35831837; PMCID: PMC9281070. 文章回顾研究了几种癌症患者用蒽环类药物化疗后胸肌质量指数(pectoralis muscle mass index,PMI)与总体死亡率,主要心脏事件(Major Adverse Cardiovascular Events,MACE)生存率间的关系。(这里给大家解释几个专业名词MACE通俗讲解就是与心脏相关的不好的事情,例如,1,心脏原因引起的死亡;2,发生非致命的心肌梗死;3;发生非致命的心血管事件。具体点来说,日常遇到的,复发心绞痛、急性心肌梗死、严重心律失常、心力衰竭、冠心病死亡,心血管疾病事件,心衰,缺血性心血管事件,心源性死亡。PMI是计算胸肌的一个指标,有点类似于我们日常生活中的BMI,PMI:胸大肌面积 [cm 2 ]/身高2 [m 2 ])文章对474名癌症患者进行了回顾性分析,发现,接受蒽环类药物治疗的患者治疗前胸肌指数越高,发生 MACE 的风险越低。认为对化疗前检测PMI,尤其是对肌肉减少症患者化疗前进行干预预防能有效减少患者的MACE风险。
Abstract:
INTRODUCTION: The impact of pectoralis muscle mass index (PMI) on cardiac events is not well studied in cancer patients, especially in those who have received chemotherapy with high potential cardiac …
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INTRODUCTION: The impact of pectoralis muscle mass index (PMI) on cardiac events is not well studied in cancer patients, especially in those who have received chemotherapy with high potential cardiac toxicity such as anthracyclines.METHODS: Individuals aged ≥18 years with a diagnosis of breast cancer, sarcoma, or lymphoma who received anthracycline-based chemotherapy at the University of Minnesota MHealth Fairview between 2009 and 2014. Eligible patients had to have two CT scans: a baseline CT scan within 6 months prior to chemotherapy and a follow-up CT scan within 2 years after treatment. The PMI was calculated as the right pectoralis muscle area indexed to height squared. Multivariable linear regression was used to analyze factors associated with PMI at follow-up, overall mortality, and major cardiac events (MACE).RESULTS: A total of 474 patients (breast cancer 192; lymphoma 184; sarcoma 98) participated with a median age of 61 years at the time of baseline CT scan; 161 (34%) were male. Almost all patients received anthracyclines except 12% who received trastuzumab only. The median baseline PMI was 5.8 cm2/m2 (4.9, 7.7) which decreased 10.5% after chemotherapy, to 5.2 cm2/m2 (4.4, 6.4). Baseline PMI was not significantly associated with OS, but we detected lower risks of MACE with larger PMI at baseline. Greater baseline PMI was associated with greater follow-up PMI, but also with greater relative PMI loss. Female gender, older age, and history of smoking were also associated with greater PMI losses.CONCLUSION: Greater pre-treatment pectoralis muscle index in patients treated with anthracyclines have a lower risk of MACE. Early identification of sarcopenia using PMI could trigger proactive engagement for intervention and risk-stratified therapies.
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25.
龙海晨
(2023-03-16 18:02):
#paper Yan Y, Ma Z, Ji X, Liu J, Ji K, Li S, Wu Q. A potential decision-making algorithm based on endoscopic ultrasound for staging early gastric cancer: a retrospective study. BMC Cancer. 2022 Jul 13;22(1):761. doi: 10.1186/s12885-022-09870-0. PMID: 35831843; PMCID: PMC9281103. 文章是研究内镜超声分析所得到的图像与胃癌早期分型间的关系,通过研究影像中肿瘤位置,是否胃溃疡,分化程度,肿瘤大小等指标,建立相关的算法,计算肿瘤分期,确定相应的治疗方案。为早期胃癌诊断治疗提供了一种决策算法。
Abstract:
BACKGROUND: Clinical staging of gastric cancer (GC) before treatment is essential. Endoscopic ultrasound (EUS) is a recommended staging tool, but its efficacy remains controversial. Our previous prospective study evaluated the …
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BACKGROUND: Clinical staging of gastric cancer (GC) before treatment is essential. Endoscopic ultrasound (EUS) is a recommended staging tool, but its efficacy remains controversial. Our previous prospective study evaluated the potential value of EUS for T staging and presented discrepancies. In this study, we aimed to evaluate the efficacy of EUS in T staging by comparing it with pathological staging. We analyze the factors that can potentially affect accuracy to identify suitable subgroups for EUS staging.METHODS: Data from a total of 1763 consecutive patients with GC from January 2015 to December 2017 were analyzed. Results from EUS and pathological T staging were compared. The factors that might affect EUS's accuracy were analyzed.RESULTS: The sensitivity, specificity, positive predictive value, and negative predictive value of EUS in patients with early GC were 62.08%, 96.13%, 90.94%, and 80.21%, respectively. The accuracy rates of uT1, uT2-uT4, and uT3-uT4 were 90.94%, 79.02%, and 78.39%, respectively. In multivariate analysis, underestimation was more likely to be observed in patients with tumors located in the middle or upper third of the stomach. Overestimation was more likely to be observed in patients with tumors located in the lower third or those without ulcer. Other factors affecting accuracy included ulcer, differentiation, larger size and undergoing surgery.CONCLUSION: Our findings highlight the role of EUS in determining the T staging of GC. Overestimation and underestimation in T-staging were significantly associated with the tumor location in early GC, and a decision-making algorithm was proposed for clinical practice in early cancers based on these findings.
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26.
龙海晨
(2023-02-05 17:58):
#paper Feng H, Cao B, Peng X, Wei Q. Cancer-associated fibroblasts strengthen cell proliferation and EGFR TKIs resistance through aryl hydrocarbon receptor dependent signals in non-small cell lung cancer. BMC Cancer. 2022 Jul 13;22(1):764. doi: 10.1186/s12885-022-09877-7. PMID: 35831824; PMCID: PMC9281029.文章属于研究肿瘤的领域。进一步描述了CAF在癌症EGFR-TKIs耐药性发展中的作用。阐述了CAF与EGFR TKIs耐药相关的潜在机制,其依赖于Kyn/AhR/AKT/ERK信号通路。阻断AhR可有效改善EGFR TKIs的结果,为临床治疗癌症提供了一种新的策略。
Abstract:
The tumor microenvironment is a dynamic cellular milieu that interacts with cancer cells and promotes tumor progression and metastasis. However, the specific mechanisms by which the tumor microenvironment impacts cancer …
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The tumor microenvironment is a dynamic cellular milieu that interacts with cancer cells and promotes tumor progression and metastasis. However, the specific mechanisms by which the tumor microenvironment impacts cancer cells' behaviors remain poorly understood. In this study, enriched cancer-associated fibroblasts (CAFs) were observed in tumor tissues isolated from epidermal growth factor receptor tyrosine kinase inhibitors (EGFR TKIs) resistant non-small cell lung cancer (NSCLC) patients. CAFs isolated from tumor tissues were capable of producing tryptophan metabolite kynurenine (Kyn), which significantly increased the proliferation and EGFR TKIs resistance of NSCLC cells. In this study, it was further observed that the activation of tryptophan 2,3-dioxygenase (TDO) in CAFs, resulted in the enhanced capability of tryptophan metabolism in them compared to normal fibroblasts. As a result, Kyn produced by CAFs facilitated the up-regulation of Aryl Hydrocarbon Receptor (AhR) signals in NSCLC, thereby resulting in the downstream ATK and ERK signaling pathways activation. Finally, inhibition of AhR signals efficiently prevented tumor growth and development of EGFR TKIs resistance, eventually improved the outcome of EGFR TKIs, and described a promising therapeutic strategy for NSCLC.
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27.
龙海晨
(2023-01-02 13:45):
#paper Rosen D B, Murphy E A, Gejman R S, et al. Cytokine response over the course of COVID-19 infection in pregnant women[J]. Cytokine, 2022, 154: 155894.
PMID: 35490452 PMCID: PMC9035355 DOI: 10.1016/j.cyto.2022.155894
这是研究新冠的文章。发表于2022年。样本是2020年3月到4月纽约市医院的。说明一下,那时候的新冠还不是现在低毒的奥密克戎,是最早的新冠病毒。文章研究的是妊娠期孕妇感染新冠后的血清情况。还有针对相应的细胞因子的治疗。回想2020年初新闻上自媒体上好多是在新冠上黑美国。其实公共防疫各国国情不同。美国的情况把人关房子里老百姓不答应。但对于高精尖层面的研究,2020年3月的时候咱们的核酸检测都没普及。美国治疗方法都到了对应不同人群和不同细胞因子的研究。文章对比分析了新冠阴性和阳性的孕妇细胞因子的水平。以及阳性孕妇不同感染时期各种细胞因子的水平。发现晚期妊娠妇女的细胞因子谱随感染的时间进程而变化,并与临床严重程度相关。
Abstract:
OBJECTIVE: To study how severity and progression of coronavirus disease (COVID-19) affect cytokine profiles in pregnant women.MATERIALS AND METHODS: 69 third-trimester, pregnant women were tested for COVID-19 infection and SARS-CoV-2 …
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OBJECTIVE: To study how severity and progression of coronavirus disease (COVID-19) affect cytokine profiles in pregnant women.MATERIALS AND METHODS: 69 third-trimester, pregnant women were tested for COVID-19 infection and SARS-CoV-2 specific IgM and IgG antibodies. Patients were stratified according to SARS-CoV-2 Reverse Transcriptase-PCR (RT-PCR) status and serology (IgM and IgG) status. Cytokines G-CSF, HGF, IL-18, IL-1Ra, IL-2Ra, IL-8, and IP-10 were measured via ELISA. Retrospective chart review for COVID-19 symptoms and patient vitals was conducted, and cytokine levels were compared between SARS-CoV-2 positive and negative cohorts, by seronegative and seropositive infection, by time course since onset of infection, and according to NIH defined clinical severity.RESULTS: IL-18, IL-1Ra, and IP-10 increased in the 44 RT-PCR positive pregnant women compared to the 25 RT-PCR negative pregnant controls. Elevated cytokine levels were found in early infections, defined by positive RT-PCR and seronegative status, and higher cytokine levels were also associated with more severe disease. By IgM seroconversion, IL-8 and IP-10 returned to levels seen in uninfected patients, while IL-18 levels remained significantly elevated.CONCLUSION: Cytokine profiles of third-trimester pregnant women vary with the time course of infection and are correlated with clinical severity.
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28.
龙海晨
(2022-12-01 17:34):
#paper Wang L, Jiang D, Zhang L. A thermophilic 8-oxoguanine DNA glycosylase from Thermococcus barophilus Ch5 is a new member of AGOG DNA glycosylase family[J]. Acta biochimica et biophysica Sinica.PMID: 35713316 DOI: 10.3724/abbs.2022072
DNA中的8-氧代胍(8oxoguanine,8oxoG)是一种主要的氧化碱基,对基因组稳定性构成严重威胁。细胞已经进化出8oxoG-DNA糖苷酶(OGG)来抵消8oxoG在DNA中产生的诱变。目前,OGG酶分为三个家族:OGG1、OGG2和AGOG。文章研究发现,来自超嗜热性欧氏菌T嗜酸乳杆菌Ch5的Tb-AGOG能在75-95摄氏度pH9.0的时候去除8oxoG有最大效率。Tb-AGOG是一种双功能DNA糖苷酶,具有糖苷酶活性和AP裂解酶活性。文章阐述了AGOG的作用机制。Tb-AGOG中的残基D41和D229对催化至关重要。
IF:3.300Q1
Acta biochimica et biophysica Sinica,
2022-06-25.
DOI: 10.3724/abbs.2022072
PMID: 35713316
Abstract:
8-Oxoguanine (8oxoG) in DNA is a major oxidized base that poses a severe threat to genome stability. To counteract the mutagenic effect generated by 8oxoG in DNA, cells have evolved …
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8-Oxoguanine (8oxoG) in DNA is a major oxidized base that poses a severe threat to genome stability. To counteract the mutagenic effect generated by 8oxoG in DNA, cells have evolved 8oxoG DNA glycosylase (OGG) that can excise this oxidized base from DNA. Currently, OGG enzymes have been divided into three families: OGG1, OGG2 and AGOG (archaeal 8oxoG DNA glycosylase). Due to the limited reports, our understanding on AGOG enzymes remains incomplete. Herein, we present evidence that an AGOG from the hyperthermophilic euryarchaeon Ch5 (Tb-AGOG) excises 8oxoG from DNA at high temperature. The enzyme displays maximum efficiency at 75°C-95°C and at pH 9.0. As expected, Tb-AGOG is a bifunctional glycosylase that harbors glycosylase activity and AP (apurinic/apyrimidinic) lyase activity. Importantly, we reveal for the first time that residue D41 in Tb-AGOG is essential for 8oxoG excision and intermediate formation, but not essential for DNA binding or AP cleavage. Furthermore, residue E79 in Tb-AGOG is essential for 8oxoG excision and intermediate formation, and is partially involved in DNA binding and AP cleavage, which has not been described among the reported AGOG members to date. Overall, our work provides new insights into catalytic mechanism of AGOG enzymes.
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29.
龙海晨
(2022-11-01 23:04):
#paper Vicente M, Schlebusch C M. African population history: an ancient DNA perspective[J]. Current Opinion in Genetics & Development, 2020, 62: 8-15. PMID: 32563853 DOI: 10.1016/j.gde.2020.05.008
上次我分享了基因和考古相关的一篇实验论著,结果几天后公布的诺贝尔奖和这项技术相关。发现群里不少人对这个方向感兴趣。这次给大家推荐一篇综述。这篇综述所涉及的领域就是通过一个古老的DNA视角去看非洲的人口历史。如果对于基因考古感兴趣的朋友,除了这篇综述之外,该综述的参考文献也推荐阅读。这篇文章通过总结相关的研究文献。通过研究非洲大陆现代人类,古代人类,远古人类的遗传基因,与考古发现相关联对比,研究非洲大陆从狩猎采集到农耕文明以及现代的文明发展。从现代和史前非洲人的不同群体中获得完整的基因组数据。随着这项技术的发展,未来的古代DNA研究有望
揭示更详细的非洲人类史前故事。人类的历史研究以前通过考古文字,基因技术的加入,可以把研究人类的历史推进到没有文字没有金属的远古时代。基因技术不仅研究未来,也研究过去。文章介绍了考古所用的ancient DNA 的技术发展。在非洲大陆上考古,各个地区,国家,部落,文明的研究与基因技术考古的运用。对基因考古人类文明感兴趣的朋友,推荐阅读该文章和文章的参考文献。
IF:3.700Q2
Current opinion in genetics & development,
2020-06.
DOI: 10.1016/j.gde.2020.05.008
PMID: 32563853
Abstract:
The history of human populations in Africa is complex and includes various demographic events that influenced patterns of genetic variation across the continent. Through genetic studies of modern-day, and most …
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The history of human populations in Africa is complex and includes various demographic events that influenced patterns of genetic variation across the continent. Through genetic studies of modern-day, and most recently, ancient African genetic variation, it became evident that deep African history is captured by the relationships among hunter-gatherers. Furthermore, it was shown that agriculture had a large influence on the distribution of current-day Africans. These later population movements changed the demographic face of the continent and descendants of farming groups today form the majority populations across Africa. Ancient DNA methods are continually evolving, and we see evidence of this in how research has advanced in the last decade. With the increased availability of full genomic data from diverse sets of modern-day and prehistoric Africans we now have more power to infer human demography. Future ancient DNA research promises to reveal more detailed stories of human prehistory in Africa.
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30.
龙海晨
(2022-10-01 21:58):
#paper Rowold D, Garcia-Bertrand R, Calderon S, Rivera L, Benedico DP, Alfonso Sanchez MA, Chennakrishnaiah S, Varela M, Herrera RJ. At the southeast fringe of the Bantu expansion: genetic diversity and phylogenetic relationships to other sub-Saharan tribes. Meta Gene. 2014 Oct 2;2:670-85. doi: 10.1016/j.mgene.2014.08.003. PMID: 25606451; PMCID: PMC4287857. 这是一篇研究撒哈拉以南的非洲的部落扩张的文章,介绍这篇文章,主要是因为咱们群里是多学科融合,我觉得咱们可以逐步开展合作。一般来说,研究几个文明的关系,通常可能从考古,人文,文化方面。这篇文章是通过对基因的分析研究来论证一个种族部落文明的迁徙发展的。通过对基因的研究分析,画出了班图人发源,迁徙,发展的路线。相当于把基因研究、数据分析运用在人文研究方面做出某些论证。咱们群里也可以试着开展合作。
Abstract:
Here, we present 12 loci paternal haplotypes (Y-STR profiles) against the backdrop of the Y-SNP marker system of Bantu males from the Maputo Province of Southeast Africa, a region believed …
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Here, we present 12 loci paternal haplotypes (Y-STR profiles) against the backdrop of the Y-SNP marker system of Bantu males from the Maputo Province of Southeast Africa, a region believed to represent the southeastern fringe of the Bantu expansion. Our Maputo Bantu group was analyzed within the context of 27 geographically relevant reference populations in order to ascertain its genetic relationship to other Bantu and non Bantu (Pygmy, Khoisan and Nilotic) sub-equatorial tribes from West and East Africa. This study entails statistical pair wise comparisons and multidimensional scaling based on YSTR Rst distances, network analyses of Bantu (B2a-M150) and Pygmy (B2b-M112) lineages as well as an assessment of Y-SNP distribution patterns. Several notable findings include the following: 1) the Maputo Province Bantu exhibits a relatively close paternal affinity with both east and west Bantu tribes due to high proportion of Bantu Y chromosomal markers, 2) only traces of Khoisan (1.3%) and Pygmy (1.3%) markers persist in the Maputo Province Bantu gene pool, 3) the occurrence of R1a1a-M17/M198, a member of the Eurasian R1a-M420 branch in the population of the Maputo Province, may represent back migration events and/or recent admixture events, 4) the shared presence of E1b1b1-M35 in all Tanzanian tribes examined, including Bantu and non-Bantu groups, in conjunction with its nearly complete absence in the West African populations indicate that, in addition to a shared linguistic, cultural and genetic heritage, geography (e.g., east vs. west) may have impacted the paternal landscape of sub-Saharan Africa, 5) the admixture and assimilation processes of Bantu elements were both highly complex and region-specific.
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31.
龙海晨
(2022-09-01 12:18):
#paper Luo F, Lin K. N6-methyladenosine (m6A) reader IGF2BP1 accelerates gastric cancer aerobic glycolysis in c-Myc-dependent manner[J]. Experimental Cell Research, 2022, 417(1): 113176. PMID: 35489385
DOI: 10.1016/j.yexcr.2022.113176
该文章研究了N 6-甲基腺苷(m 6 A),RNA m 6 A reader IGF2BP1 在胃癌发生发展中的作用。m 6 A参与调节多种癌症中的癌细胞增殖、转移、形成。文章分析了IGF2BP1在胃癌(gastric cancer,GC)中的功能和机制。研究结果表明,IGF2BP1 在 GC 组织中上调,可作为 GC 患者预后不良的预测因子。在功能上,IGF2BP1 促进体外 GC 细胞迁移和有氧糖酵解。IGF2BP1 敲低抑制了体内肿瘤的生长。文章证明了 IGF2BP1 通过 m6A 依赖性方式直接与 c-MYC mRNA 相互作用。文章发现,m 6 A reader IGF2BP1 以依赖 m 6 A/c-Myc 方式促进了 GC 的致癌性,这可能为 GC 提供治疗策略。
Abstract:
The N-methyladenosine (mA) is involved in the regulation of cell proliferation and metastasis formation in multiple cancers. However, the biological significance of RNA mA reader IGF2BP1 and the modification of …
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The N-methyladenosine (mA) is involved in the regulation of cell proliferation and metastasis formation in multiple cancers. However, the biological significance of RNA mA reader IGF2BP1 and the modification of IGF2BP1 itself have not been fully investigated. Here, we analyzed the functions and mechanism of IGF2BP1 in gastric cancer (GC). Results showed that IGF2BP1 upregulated in GC tissue and acted as a predictor of poor prognosis for GC patients. Functionally, IGF2BP1 promoted the migration and aerobic glycolysis of GC cells in vitro. Moreover, IGF2BP1 knockdown repressed the tumor growth in vivo. We also demonstrated that IGF2BP1 directly interacted with c-MYC mRNA via m6A-dependent manner to by stabilize its stability. Overall, these findings demonstrated that mA reader IGF2BP1 facilitated the carcinogenic of GC in mA/c-Myc-dependent manner, which might provide critical therapeutic strategy for GC.
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32.
龙海晨
(2022-08-02 17:38):
#paper Lu W, Ren S, Dong W, et al. Albumin-induced premature senescence in human renal proximal tubular cells and its relationship with intercellular fibrosis[J]. Acta Biochimica et Biophysica Sinica, 2022.PMID: 35713317
DOI: 10.3724/abbs.2022055
文章探讨白蛋白诱导的早衰对肾小管纤维化的影响及其可能作用的机制。通过使用不同浓度的牛血清白蛋白(BSA)以及是否加入si-p21刺激HK-2细胞进行实验,并以SA-
β-半乳糖活性、衰老相关分泌表型(SASP)、层粘连蛋白B1被用作衰老的标志物。HK-2细胞在BSA刺激下,阻滞在G2/M期的细胞显著增加,p21、pCDC25C和p-CDK1的表达水平升高,纤维生成增加。当p21表达受到抑制时,pCDC25C和p-CDK1的表达水平降低,G2/M期阻滞得到改善,从而减少细胞凋亡的产生,同时减少纤维生成。实验证明BSA诱导一系列衰老表型。激活HK-2细胞中p21的表达,p21通过CDC25C/CDK1途径,调节细胞周期阻滞在G2/M期,这些变化导致早衰,最终导致纤维化增加。
IF:3.300Q1
Acta biochimica et biophysica Sinica,
2022-Jul-25.
DOI: 10.3724/abbs.2022055
PMID: 35713317
Abstract:
The presence of senescent cells is associated with renal fibrosis. This study aims to investigate the effect of albumin-induced premature senescence on tubulointerstitial fibrosis and its possible mechanism . Different …
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The presence of senescent cells is associated with renal fibrosis. This study aims to investigate the effect of albumin-induced premature senescence on tubulointerstitial fibrosis and its possible mechanism . Different concentrations of bovine serum albumim (BSA) with or without si-p21 are used to stimulate HK-2 cells for 72 h, and SA-β-gal activity, senescence-associated secretory phenotypes (SASPs), LaminB1 are used as markers of senescence. Immunofluorescence staining is performed to characterize the G2/M phase arrest between the control and BSA groups. Alterations in the DNA damage marker γ-H2AX, fibrogenesis, and associated proteins at the G2/M phase, such as p21, p-CDC25C and p-CDK1, are evaluated. Compared with those in the control group, the SA-β-gal activity, SASP, and γ-H2AX levels are increased in the BSA group, while the level of LaminB1 is decreased. Meanwhile, HK-2 cells blocked at the G2/M phase are significantly increased under the stimulation of BSA, and the levels of p21, p-CDC25C and p-CDK1, as well as fibrogenesis are also increased. When p21 expression is inhibited, the levels of p-CDC25C and p-CDK1 are decreased and the G2/M phase arrest is improved, which decreases the production of fibrogenesis. In conclusion, BSA induces renal tubular epithelial cell premature senescence, which regulates the G2/M phase through the CDC25C/CDK1 pathway, leading to tubulointerstitial fibrosis.
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33.
龙海晨
(2022-07-02 20:10):
#paper Zheng Y, Jönsson J, Hao C, et al. hnRNP A1 and hnRNP A2 inhibit splicing to HPV16 splice site SA409 through a UAG-containing sequence in the E7 coding region[J]. Journal of Virology, 2020. DOI: 10.1128/jvi.01509-20 PMID: 32759322 PMCID: PMC7527060 该文章研究发现hnRNP A1和hnRNP A2通过E7编码区中含有UAG的序列抑制HPV16剪接位点SA409的剪接。人乳头瘤病毒16型(HPV16)属于HPV的高危型,并导致多种肛门,生殖器癌和头颈癌,一般大家最熟悉的就是宫颈癌,实际上高危型HPV可以引发多种癌症。HPV16的两种蛋白E6和E7可防止细胞凋亡并促进有丝分裂,对HPV16生命周期的完成、感染细胞的转化和恶性肿瘤的维持至关重要。E6和E7由两个通过选择性剪接以互斥方式生成的mRNA产生。虽然E6蛋白是由未拼接的mRNA制成的,但E7是由相同前体mRNA的拼接版本制成的。由于恶性转化需要足够数量的E6和E7,这种复杂的基因表达排列使得E6和E7的表达容易受到外部干扰。由于没有针对HPV16的抗病毒药物,详细了解HPV16 E6和E7 mRNA剪接的调节可能会发现新的治疗靶点。文章可总结为:1. E6,E7是HPV的重要蛋白他们对HPV的繁殖至关重要同时可以改变宿主的基因导致癌症。 2. E6,E7由HPV的同一段基因上的位点来调控。 3. 受到hnRNA1或者hnRNA2的调节,位点会做出不同反应从而影响E6或者E7的产生。hnRNP A1和A2对E6编码区这个非常脆弱的HPV16剪接事件有相反的影响。 4. hnrnpa1和A2对hpv16mrna剪接的影响差异主要是由于这两种蛋白的C端保守程度较低。结果还表明,hnRNP A2与其他下游RNA序列相互作用,以促进剪接到下游的3′-剪接SA742,而不是导致内含子保留在E6编码区。
Abstract:
Human papillomavirus type 16 (HPV16) belongs to the high-risk-group of HPVs and is causing a variety of anogenital cancers and head and neck cancer. The two HPV16 oncoproteins E6 and …
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Human papillomavirus type 16 (HPV16) belongs to the high-risk-group of HPVs and is causing a variety of anogenital cancers and head and neck cancer. The two HPV16 oncoproteins E6 and E7 prevent apoptosis and promote mitosis and are essential for completion of the HPV16 life cycle and for transformation of the infected cell and maintenance of malignancy. E6 and E7 are produced from two mRNAs that are generated in a mutually exclusive manner by alternative splicing. While E6 protein is made from the unspliced mRNA, E7 is made from the spliced version of the same pre-mRNA. Since sufficient quantities of both E6 and E7 are required for malignant transformation, this intricate arrangement of gene expression renders E6 and E7 expression vulnerable to external interference. Since antiviral drugs to HPV16 are not available, a detailed knowledge of the regulation of HPV16 E6 and E7 mRNA splicing may uncover novel targets for therapy.
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34.
龙海晨
(2022-06-10 12:26):
#paper Ropio J, Chebly A, Ferrer J, Prochazkova-Carlotti M, Idrissi Y, Azzi-Martin L, Cappellen D, Pham-Ledard A, Soares P, Merlio JP, Chevret E. Reliable blood cancer cells' telomere length evaluation by qPCR. Cancer Med. 2020 May;9(9):3153-3162. doi: 10.1002/cam4.2816. Epub 2020 Mar 6. PMID: 32142223; PMCID: PMC7196062.题目:Reliable blood cancer cells' telomere length evaluation by qPCR
端粒缩短与一系列不同的人类疾病有关,因此需要可靠的测量方法来揭示这种关联。在众多端粒长度测量方法中,qPCR被认为是一种易于进行且经济高效的方法,可以研究DNA含量较低的样本。文章采用采用相对和绝对qPCR方法检测癌细胞端粒长度。qPCR数据与terminal restriction fragment (TRF),(端粒长度测量“金标准”)测量值进行比较。从每个样品(细胞系、患者和健康供体)的重复反应中收集数据。当重复中 Ct 的标准偏差低于 0.5 时,接受重复值。qPCR 估计的平均细胞系端粒长度(4.320 ± 0.143 kb)与 TRF 估计的(5.652 kb).相似,P = 0.5040。对基于 qPCR 的技术,测量端粒长度要求使用高质量的 DNA,当DNA降解严重时,QPCR的测量不准确。如果QPCR法测量端粒长度的细胞是癌细胞,那关键点在于选择合适的参考基因,因为癌细胞的增殖不像正常细胞那样规范,癌细胞增殖时有些基因会丢失,癌细胞还会积累遗传和染色体异常。
Abstract:
BACKGROUND: Telomere shortening is linked to a range of different human diseases, hence reliable measurement methods are needed to uncover such associations. Among the plethora of telomere length measurement methods, …
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BACKGROUND: Telomere shortening is linked to a range of different human diseases, hence reliable measurement methods are needed to uncover such associations. Among the plethora of telomere length measurement methods, qPCR is reported as easy to conduct and a cost-effective approach to study samples with low DNA amounts.METHODS: Cancer cells' telomere length was evaluated by relative and absolute qPCR methods.RESULTS: Robust and reproducible telomere length measurements were optimized taking into account a careful reference gene selection and by knowing the cancer cells ploidy. qPCR data were compared to "gold standard" measurement from terminal restriction fragment (TRF).CONCLUSIONS: Our study provides guidance and recommendations for accurate telomere length measurement by qPCR in cancer cells, taking advantage of our expertise in telomere homeostasis investigation in primary cutaneous T-cell lymphomas. Furthermore, our data emphasize the requirement of samples with both, high DNA quality and high tumor cells representation.
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35.
龙海晨
(2022-05-12 11:23):
#paper Artesunate exhibits synergistic anti-cancer effects with cisplatin on lung cancer A549 cells by inhibiting MAPK pathway
PMID: 32898605 GENE杂志Gene 2021 Jan 15;766:145134.
doi: 10.1016/j.gene.2020.145134. Epub 2020 Sep 6.
DOI: 10.1016/j.gene.2020.145134
文章研究了青蒿琥酯(Artesunate,ART)与顺铂(cisplatin,CIS)联合发挥抗肺癌作用。使用A549肺癌细胞系进行研究。发现ART加大剂量获延长使用时间均能抑制细胞增殖。且ART与CIS联合使用,抑癌效果要显著强于单独用ART获单独用CIS,使用裸鼠进行动物实验也得到了同样结果。并证明,联合效果是通过P38/JNK/ERK MAPK信号通路发挥作用。
Abstract:
BACKGROUND: Artesunate (ART) has been used extensively as anti-malarial drugs worldwide. Besides, it has also been reported to have anti-cancer activities. This study was aimed to explore the anti-cancer activity …
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BACKGROUND: Artesunate (ART) has been used extensively as anti-malarial drugs worldwide. Besides, it has also been reported to have anti-cancer activities. This study was aimed to explore the anti-cancer activity of ART in combination with cisplatin (CIS) on A549 cells.METHODS: Cells were cultured with different concentrations of ART and/or CIS for 24, 48, or 72 h to test the anti-proliferative effects by CCK-8 assay. Colony formation assay and EdU staining were also performed. TUNEL staining was used to illustrate the morphologic changes. Cell cycle and apoptosis were determined by flow cytometry assay, and Western blot analysis was conducted to detect the expression of apoptosis- and proliferation-related proteins. Caspase activities were determined by colorimetric assay kit. Moreover, the synergistic effect of ART with CIS in A549 cell xenograft model was also determined.RESULTS: ART significantly inhibited cell proliferation in dose- and time-dependent manners. Collectively, the combination treatment remarkably decreased colony formation rates and increased the rates of TUNEL-positive cells compared with mono-treatment. Mechanistically, the combination treatment influenced the expression of Bcl-2, Bax, p-P53, Caspase-3/7, Caspase-9, CyclinB1, P34, P21, and synergistically regulated the activity of P38/JNK/ERK1/2 MAPK pathway. In mice A549 xenograft tumors, the combination strategy significantly increased the anti-cancer efficacy of ART and CIS alone, consistent with the in vitro observations.CONCLUSIONS: ART exhibited significant anti-tumor effect on A549 cells and this efficiency could be enhanced by combination with CIS.
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36.
龙海晨
(2022-04-10 12:28):
#paper Heat Shock Protein Beta 1 is a Prognostic
Biomarker and Correlated with Immune Infiltrates
in Hepatocellular Carcinoma PMID: 34531676
PMCID: PMC8439715
DOI: 10.2147/IJGM.S330608
推荐理由,最近在尝试自己做生信分析,这是我尝试复现文中生信分析方法的文章,文章使用生信分析和自己做免疫组化验证相结合的方法进行实验。
文章研究目的:研究旨在阐明HSPB1在肝癌中的表达及其潜在的治疗和预后价值。方法:从癌症基因组图谱和基因表达综合数据库中收集了肝癌和正常肝组织中HSPB1表达水平的数据。用免疫组织化学(IHC)对其进行了验证。ROC和Kaplan-Meier 生存曲线研究分析HSPB1在肝癌预后中的作用。生信分析部分包含:RNA-Sequencing Data and Bioinformatics(使用TCGA数据库数据GEO分析,免疫组化实验验证)ROC和Kaplan-Meier 生存曲线分析HSPB1在肝癌患者中的预后。单变量和多变量回归分析,分析HSPB1表达与肝癌生存率之间的相关性。用(STRING) 构建HSPB1的蛋白质相互作用(PPI)网络。HSPB1和HSPB1基因信号通路预测使用Gene Ontology (GO)和Kyoto Encyclopedia of Genes and Genomes (KEGG).用Tumor Immune Estimation Resource (TIMER) 和single sample Gene Set Enrichment Analysis (ssGSEA)分析HSPB1与肿瘤之间的关系。免疫细胞,包括B细胞、中性粒细胞、巨噬细胞、CD4+T细胞和CD8+T细胞。文章结论:HSPB1表达和免疫细胞浸润和肝癌患者预后之间存在显著相关性。HSPB1的表达可能对肝癌患者有明显的预后价值,而且可能是肝癌免疫治疗的潜在靶点。
IF:2.100Q2
International journal of general medicine,
2021.
DOI: 10.2147/IJGM.S330608
PMID: 34531676
PMCID:PMC8439715
Abstract:
BACKGROUND: Hepatocellular carcinoma (HCC) is one of the most serious malignancies. The main features of HCC are vascular invasion and drug resistance. Ferroptosis is a novel cell program that is …
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BACKGROUND: Hepatocellular carcinoma (HCC) is one of the most serious malignancies. The main features of HCC are vascular invasion and drug resistance. Ferroptosis is a novel cell program that is involved in several diseases, such as cancer. Heat shock protein beta 1 (HSPB1) is a major component of heat shock proteins. A recent study showed that HSPB1 could be a new therapeutic target for colorectal cancer with 5-fluorouracil-acquired resistance. However, the functional role of HSPB1 in HCC remains unclear.AIM: The aim of this study is to clarify HSPB1 expression in HCC and its potential therapeutic and prognostic value.METHODS: We collected data on HSPB1 expression levels in HCC and normal liver tissues from The Cancer Genome Atlas and Gene Expression Omnibus databases. We then validated it using immunohistochemistry (IHC). Receiver operating characteristic and Kaplan-Meier survival curves were used to investigate the role of HSPB1 in the prognosis analysis of HCC. Further, we used the online Search Tool for the Retrieval of Interacting Genes/Proteins website, Gene Ontology, and Kyoto Encyclopedia of Genes and Genomes to conduct enrichment analysis and identify the predictive signaling pathways. Meanwhile, we used the TIMER and GSVA package of R (v3.6.3) to analyze the association between HSPB1 and immunocyte infiltration.RESULTS: Compared to normal tissues, there was differential expression of HSPB1 in pan-cancers. HSPB1 expression was higher in HCC tissues than in normal tissues (p<0.05). There was an evident significant difference between HSPB1 mRNA levels and histologic grade, vascular invasion, and alpha-fetoprotein level (all p values<0.05). Univariate analysis indicated that HCC patients with high HSPB1 levels had shorter overall survival rates than those with low HSPB1 levels (p<0.05). MAPK14, HSPA8, MAPKAPK3, MAPKAPK5, and MAPKAPK2 are essential proteins that interact with HSPB1. There was a significant correlation between HSPB1 expression levels and immune cell infiltration, including CD4+ T cells (r=0.203, p<0.05).CONCLUSION: High HSPB1 expression is closely associated with a worse prognosis in HCC patients, and HSPB1 may be a target of immunotherapy in HCC.
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37.
龙海晨
(2022-03-31 12:25):
#paper doi: 10.1186/s12935-022-02506-0 Cancer Cell International (2022) 22:94 HPV16 E6 gene polymorphisms
and the functions of the mutation site
in cervical cancer among Uygur ethnic and Han
nationality women in Xinjiang, China
三月比较忙,用自己课题组的文献发过来应该也符合要求吧,用生物信息学技术和细胞生物学,分子生物学实验。文章探寻维吾尔族和汉族妇女感染HPV的基因型分布。分析高危型病毒HPV16E6基因多态性位点及其与宫颈癌发生发展的关系。使用欧洲标准原型对HPV16 E6序列进行进化树分析,PV16 E6-T295/T350、G295/G350和T295/G350 GV230载体稳定转染宫颈癌C33A细胞,通过CCK8和克隆形成试验、转移膨胀和细胞划痕试验、流式细胞仪试验分析细胞增殖、迁移和侵袭、凋亡。
研究结果:1. 2879人中HPV总感染率为26.390%(760/2879),维吾尔族为22.87%(196/857),汉族为27.89%(564/2022)(P<0.05)。
2.在110个突变中,65例E6基因在核苷酸350(T350G)处发生突变亮氨酸变成缬氨酸(L83V)。此外,还有7例E6基因在295核苷酸处发生突变(T295G),天冬氨酸转变为谷氨酸(D64E)。
3.当突变位点的E6载体被转染到C33A中时,它们能促进细胞增殖、迁移、侵袭,并抑制细胞凋亡。T295/G350-E6为阳性显著强于G295/G350和T295/T350,G295/G350显著强于T295/T350(P<0.05)。T295/G350对C33A细胞的作用最强,G295/G350明显强于T295/T350(P<0.05)。
结论:1.中国新疆维吾尔族和汉族的HPV阳性感染率不同,感染的基因型分布也不同。
2.用不同的真核表达载体转染C33A细胞后,
T295/G350比G295/G350突变位点在更大程度上促进了C33A细胞的增殖、迁移和侵袭,G295/G350比T295/T350有更强的效果。
IF:5.300Q1
Cancer cell international,
2022-Feb-22.
DOI: 10.1186/s12935-022-02506-0
PMID: 35193568
PMCID:PMC8862000
Abstract:
BACKGROUND: To investigate the genotype distribution of human papillomavirus (HPV) in infected Uygur and Han women in Xinjiang, China; analyze the HPV16 E6 gene polymorphism site and relationship with the …
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BACKGROUND: To investigate the genotype distribution of human papillomavirus (HPV) in infected Uygur and Han women in Xinjiang, China; analyze the HPV16 E6 gene polymorphism site and relationship with the development of cervical cancer.METHODS: The HPV16 E6 sequence was analyzed using the European standard prototype to perform an evolutionary tree. HPV16 E6-T295/T350, G295/G350, and T295/G350 GV230 vectors were stably transfected into cervical cancer C33A cells to analyze the cell proliferation, migration and invasion, apoptosis by CCK8 and clonogenic assays, transwell and cell scratch assays, FACS experiments.RESULTS: The total HPV infection rate was 26.390% (760/2879), whereas the Uygur 22.87% (196/857) and the Han was 27.89% (564/2022) (P < 0.05). Among 110 mutations, 65 cases of E6 genes were mutated at nucleotide 350 (T350G) with the leucine changing to valine (L83V). Moreover, there were 7 cases of E6 gene mutated at nucleotide 295 (T295G) with aspartic changing to glutamic (D64E). When E6 vector(s) of mutations sites were transfected into C33A cells, they were found to promote cellular proliferation, migration, invasion, and inhibit apoptosis. T295/G350-E6 was significantly stronger than G295/G350 and T295/T350, G295/G350 was significantly stronger than T295/T350 (P < 0.05). The T295/G350 had the strongest effect on C33A cells and G295/G350 was significantly stronger than T295/T350 (P < 0.05).CONCLUSIONS: The positive HPV infection rates differed between the Uygur and Han in Xinjiang, China, and the genotype distribution of infection was different. After transfecting C33A cells with different eukaryotic expression vectors, the T295/G350 mutation site promoted the proliferation, migration, and invasion of C33A cells to a greater extent than G295/G350; however, G295/G350 had a stronger effect than T295/T350.
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38.
龙海晨
(2022-02-16 00:55):
#paper doi:10.1126/science.aah5869 Science, 2016, Generation of influenza A viruses as live but replication-incompetent virus vaccines
。推荐理由。”通过反向遗传学设计研制甲型流感病毒疫苗的论文。研究解决的问题:
1.可以快速大量生产活病毒疫苗(RNA)
2.信使RNA中引入了一个终止密码子让病毒失去复制能力(与之前的方法相比便宜高效)
3.插入位置在保守区,病毒若通过突变的形式恢复制能力会直接死亡
4.技术的核心:拥有用于病毒恢复复制能力的细胞系用于生产病毒,作为疫苗。病毒离开专门细胞系后丧失复制能力。
5.意外的收获:可以当治疗药物使用。新的病毒和野生型结合会使野生型病毒消失。(之前的技术常发生:活疫苗病毒与野生病毒相遇结果活疫苗产生毒性)。通过在(甲型)流感病毒的信使RNA中引入了一个终止密码子,并保留病毒的完整结构。这样,保留了感染性的病毒进入人体后,可以激活人体细胞的全部免疫反应,但由于终止密码子的存在,病毒无法进行蛋白质翻译,因而失去复制能力。
Science (New York, N.Y.),
2016-12-02.
PMID: 27934767
Abstract:
The conversion of life-threatening viruses into live but avirulent vaccines represents a revolution in vaccinology. In a proof-of-principle study, we expanded the genetic code of the genome of influenza A …
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The conversion of life-threatening viruses into live but avirulent vaccines represents a revolution in vaccinology. In a proof-of-principle study, we expanded the genetic code of the genome of influenza A virus via a transgenic cell line containing orthogonal translation machinery. This generated premature termination codon (PTC)-harboring viruses that exerted full infectivity but were replication-incompetent in conventional cells. Genome-wide optimization of the sites for incorporation of multiple PTCs resulted in highly reproductive and genetically stable progeny viruses in transgenic cells. In mouse, ferret, and guinea pig models, vaccination with PTC viruses elicited robust humoral, mucosal, and T cell-mediated immunity against antigenically distinct influenza viruses and even neutralized existing infecting strains. The methods presented here may become a general approach for generating live virus vaccines that can be adapted to almost any virus.
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