来自用户 龙海晨 的文献。
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21.
龙海晨
(2023-11-30 01:51):
#paper Janbazacyabar H, van Bergenhenegouwen J, Varasteh S, Garssen J, Folkerts G, Braber S. Repeated exposure of bronchial epithelial cells to particular matter increases allergen-induced cytokine release and permeability. Cytokine. 2022 Jun;154:155878. doi: 10.1016/j.cyto.2022.155878. Epub 2022 Apr 8. PMID: 35405483. 这是一篇研究暴露在颗粒污染物下与过敏的文章。作者构建了一个通有电极的细胞模型。用以模拟检测长期暴露在柴油废气颗粒物环境下细胞的过敏反应。为进一步研究呼吸道在重污染下的过敏,哮喘提供了基础。
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Long term particulate matter (PM) exposure has been associated with an increased incidence of respiratory diseases. Here, an in vitro model was developed to study how long term diesel exhaust …
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Long term particulate matter (PM) exposure has been associated with an increased incidence of respiratory diseases. Here, an in vitro model was developed to study how long term diesel exhaust particle (DEP) exposure might predispose to the development of allergic reactions. Airway epithelial (16HBE) cells were exposed to low concentrations of diesel exhaust particle (DEP) for 4 days after which they were challenged with house dust mite (HDM) extract (24 h). Compared to acute exposure (24 h), 4 days DEP exposure to 16HBE cells further reduced the transepithelial electrical resistance (TEER) and increased CXCL-8 release. DEP pre-exposure aggravated HDM-induced loss of TEER, increased tracer flux across the barrier and reduced CLDN-3 expression in these 16HBE cells. HDM-induced cytokine (IL-6, CCL-22, IL-10 and CXCL-8) release was significantly increased after DEP pre-exposure. In the current study an in vitro model with long term PM exposure was presented, which might be helpful for further understanding the interplay between long term PM exposure and allergic responses.
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22.
龙海晨
(2023-10-25 12:35):
#paper Chaves DG, de Oliveira LC, da Silva Malta MCF, de Oliveira IR, Barbosa-Stancioli EF, Teixeira MM, Martins ML. Pro-inflammatory immune profile mediated by TNF and IFN-γ and regulated by IL-10 is associated to IgG anti-SARS-CoV-2 in asymptomatic blood donors. Cytokine. 2022 Jun;154:155874. doi: 10.1016/j.cyto.2022.155874. Epub 2022 Apr 4. PMID: 35397248; PMCID: PMC8977499.
文章是巴西在新冠时期做的研究,对7837名献血者做的研究检测血液中的抗体水平。发现症状严重的TNF、IFN-γ和IL-10浓度较高。症状的严重程度与IgG抗体的中和能力有关。而IgG抗体的中和能力和血清的CCL5和CXCL10显著相关。文章据此假设维持在IL-10调节良好的促炎微环境中可以提高对新冠的免疫适应性。
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The SARS-CoV-2 virus has infected and killed millions of people, but little is known about the risk factors that lead to the development of severe, mild or asymptomatic conditions after …
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The SARS-CoV-2 virus has infected and killed millions of people, but little is known about the risk factors that lead to the development of severe, mild or asymptomatic conditions after infection. The individual immune response and the balance of cytokines and chemokines have been shown to be important for the prognosis of patients. Additionally, it is essential to understand how the production of specific antibodies with viral neutralizing capacity is established. In this context, this study aimed to identify positive individuals for IgG anti-SARS-CoV-2 in a large population of blood donors (n = 7837) to establish their immune response profile and to evaluate its viral neutralization capacity. The prevalence found for IgG anti-SARS-CoV-2 was 5.6% (n = 441), with male blood donors (61.9%) being more prevalent among the positive ones. The results showed that positive individuals for IgG anti-SARS-CoV-2 have high serum concentrations of chemokines, TNF, IFN-γ and IL-10. The analyses showed that the positivity index for IgG anti-SARS-CoV-2 is associated with the neutralizing capacity of the antibodies, which, in turn, is significantly related to lower serum concentrations of CCL5 and CXCL10. The results allow us to hypothesize that the development and maintenance of IgG anti-SARS-CoV-2 antibodies in infected individuals occurs in a pro-inflammatory microenvironment well regulated by IL-10 with great capacity for recruiting cells from the innate and adaptive immune systems.
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23.
龙海晨
(2023-09-27 10:40):
#paper Falahi S, Zamanian MH, Feizollahi P, Rezaiemanesh A, Salari F, Mahmoudi Z, Gorgin Karaji A. Evaluation of the relationship between IL-6 gene single nucleotide polymorphisms and the severity of COVID-19 in an Iranian population. Cytokine. 2022 Jun;154:155889. doi: 10.1016/j.cyto.2022.155889. Epub 2022 Apr 19. PMID: 35461173; PMCID: PMC9015956. 这是一篇2022年发表的新冠研究的文章。这个杂志影响因子3.8,对于这个杂志我真是感情复杂,当初我2022年投稿该杂志,他们说我不适合在他们这发表,然后给我推荐了另一个杂志,是杂志内部推荐,我的文章自动过去,然后他推荐的那个杂志把我拒稿了。现在,我很感谢他们当初的不发之恩,最后我的文章在4.6的杂志上发表还是中科院的Top期刊。这是一篇阴性结果的研究,估计就因为蹭了当时新冠的热点得以发表。做的实验不多研究的也简单,就是SNP位点的,研究的伊朗克尔曼沙赫库尔德人,共346人(175名重度新冠肺炎患者和171名轻度新冠肺炎患者)分析白细胞介素-6(IL-6)基因多态性,从患者外周血白细胞中提取基因组DNA以确定三个选择的SNPs的基因型(rs1800795(−174 G>C)、rs1800796(−572 G>C,和rs1800797(−597 G>A)),结果表明这些SNP与伊朗克尔曼沙赫库尔德人口中新冠肺炎的严重程度无关。SNP,阴性结果,如果不是当初新冠的热度,估计发不了这么高分的杂志。
Abstract:
BACKGROUND: Emerged coronavirus disease 2019 (COVID-19) is a pandemic caused by the severe acute respiratory syndrome coronavirus 2 (SARS-COV-2). Disease severity is associated with elevated levels of proinflammatory cytokines, such …
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BACKGROUND: Emerged coronavirus disease 2019 (COVID-19) is a pandemic caused by the severe acute respiratory syndrome coronavirus 2 (SARS-COV-2). Disease severity is associated with elevated levels of proinflammatory cytokines, such as interleukin-6 (IL-6). Genetic polymorphisms in the regulatory regions of cytokine genes may be associated with differential cytokine production in COVID-19 patients. This study aimed to investigate the association between three potentially functional single-nucleotide polymorphisms (SNPs) in the promoter region of IL-6 and the severity of susceptibility to COVID-19 in an Iranian population.METHODS: In total, 346 individuals (175 patients with severe COVID-19 and 171 patients with mild COVID-19) were recruited for this cohort study. Genomic DNA was extracted from peripheral blood leukocytes of patients to determine the genotypes of three selected SNPs (rs1800795 (-174 G > C), rs1800796 (-572 G > C), and rs1800797 (-597 G > A)) in the promoter region of the IL-6 gene using polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) method.RESULTS: There were no significant differences in the genotype or allele distribution of selected SNPs (rs1800795 (-174 G > C), rs1800796 (-572 G > C), and rs1800797 (-597 G > A)) in the promoter region of the IL-6 gene in patients with severe COVID-19 and patients with mild COVID-19.DISCUSSION: Our study indicated that these SNPs are not associated with COVID-19 severity in the Kurdish population from Kermanshah, Iran.
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24.
龙海晨
(2023-08-24 13:14):
#paper Fairley JA, Cheetham MH, Patton SJ, Rouleau E, Denis M, Dequeker EMC, Schuuring E, van Casteren K, Fenizia F, Normanno N, Deans ZC. Results of a worldwide external quality assessment of cfDNA testing in lung Cancer. BMC Cancer. 2022 Jul 12;22(1):759. doi: 10.1186/s12885-022-09849-x. PMID: 35820813; PMCID: PMC9275131. 文章是对世界范围内用cfDNA检测肺癌的进行质量评估。45个国家304家注册实验室中有264个实验室提交了结果。排除无法从人造血浆中提取DNA的实验室,大多数实验室获得了准确的结果,对于不同的基因突变采用不同的检测手段准确率不同。实验证明了CFDNA检测肺癌的可行性。
Abstract:
BACKGROUND: Circulating cell free DNA (cfDNA) testing of plasma for EGFR somatic variants in lung cancer patients is being widely implemented and with any new service, external quality assessment (EQA) …
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BACKGROUND: Circulating cell free DNA (cfDNA) testing of plasma for EGFR somatic variants in lung cancer patients is being widely implemented and with any new service, external quality assessment (EQA) is required to ensure patient safety. An international consortium, International Quality Network for Pathology (IQNPath), has delivered a second round of assessment to measure the accuracy of cfDNA testing for lung cancer and the interpretation of the results.METHODS: A collaboration of five EQA provider organisations, all members of IQNPath, have delivered the assessment during 2018-19 to a total of 264 laboratories from 45 countries. Bespoke plasma reference material containing a range of EGFR mutations at varying allelic frequencies were supplied to laboratories for testing and reporting according to routine procedures. The genotyping accuracy and clinical reporting was reviewed against standardised criteria and feedback was provided to participants.RESULTS: The overall genotyping error rate in the EQA was found to be 11.1%. Low allelic frequency samples were the most challenging and were not detected by some testing methods, resulting in critical genotyping errors. This was reflected in higher false negative rates for samples with variant allele frequencies (VAF) rates less than 1.5% compared to higher frequencies. A sample with two different EGFR mutations gave inconsistent detection of both mutations. However, for one sample, where two variants were present at a VAF of less than 1% then both mutations were correctly detected in 145/263 laboratories. Reports often did not address the risk that tumour DNA may have not been tested and limitations of the methodologies provided by participants were insufficient. This was reflected in the average interpretation score for the EQA being 1.49 out of a maximum of 2.CONCLUSIONS: The variability in the standard of genotyping and reporting highlighted the need for EQA and educational guidance in this field to ensure the delivery of high-quality clinical services where testing of cfDNA is the only option for clinical management.
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25.
龙海晨
(2023-07-11 02:13):
#paper Sun M, Ji H, Xu N, Jiang P, Qu T, Li Y. Real-world data analysis of immune checkpoint inhibitors in stage III-IV adenocarcinoma and squamous cell carcinoma. BMC Cancer. 2022 Jul 13;22(1):762. doi: 10.1186/s12885-022-09843-3. PMID: 35831785; PMCID: PMC9277844. 这是一篇临床上回顾性研究肺癌的文章,主要研究对象:III-IV期肺腺癌和鳞状细胞癌患者。使用免疫检查点抑制剂immune checkpoint inhibitors (ICIs)方法治疗后的情况。对315名患者使用ICIs疗法,并对患者进行评估,发现,ICIs对肺癌患者有良好的疗效,显著提高了患者生存期中位数,也缓解了症状。从结果数据看,使用ICIs也存在不良反应。
Abstract:
Abstract Background This study was designed to investigate the clinical application, efficacy, and safety of immune checkpoint inhibitors (ICIs) in the treatment of lung cancer in the real world. Methods …
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Abstract Background This study was designed to investigate the clinical application, efficacy, and safety of immune checkpoint inhibitors (ICIs) in the treatment of lung cancer in the real world. Methods A retrospective, observational analysis was conducted on patients treated with ICIs in four tertiary hospitals in the region from January 2015 to March 2021, to evaluate the clinical efficacy of ICIs single-agent or combined chemotherapy and anti-vascular drugs in the first-line or second-line treatment of patients with lung cancer. Results Three hundred and fifteen patients were enrolled in this study. In patients with stage III-IV adenocarcinoma and Squamous cell carcinoma, the objective response rate (ORR) and disease control rate (DCR) were 35.5% (87/245) and 93.5% (229/245), respectively, the median progression-free survival (PFS) was 10.8 months, and the median overall survival (OS) was not reached. A total of 132 patients received ICIs as the first-line treatment, the median treatment cycle was 8 cycles (2–20 cycles), the short-term efficacy ORR was 38.6%, DCR was 93.9%, and the median PFS was 11.4 months. One hundred thirteen patients received ICIs treatment as second-line treatment, the median treatment cycle was five cycles (2–10 cycles), the short-term efficacy ORR was 31.9%, DCR was 92.9%, and the median PFS was 10.0 months. There were no statistically significant differences in ORR, DCR, or median PFS with ICIs as the first-line treatment compared with the second-line treatment(P > 0.05). The results of subgroup analysis showed that Eastern Cooperative Oncology Group performance status (ECOG PS), epidermal growth factor receptor (EGFR) mutation status, pathological type and number of treatment lines were not correlated with median PFS(P > 0.05). However, there were statistically significant differences in programmed death-ligand 1(PD-L1) expression, corticosteroid interference, and antibiotic (Abx) treatment among all groups (P < 0.05). In terms of safety, the overall incidence of adverse reactions in 315 patients was 62.5%, and the incidence of immune-related adverse events (irAEs) was 13.7%. Grade 1–2 and 3–4 incidence of adverse events were 34.9 and 27.65%, respectively. There were four patients who experienced fatal irAEs, two cases were liver damage leading to liver failure, one case was immune related pneumonia, and one case was immune related myocarditis. Conclusion In the real world, ICIs has a good effect on patients with lung cancer and significantly improves ORR and PFS.
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26.
龙海晨
(2023-06-25 00:06):
#paper Haichen Long, Yangyang Li, Huijuan Wang, Bingxuan Guo, Shuyan Song, Xiangyi Zhe, Hongtao Li, Dongmei Li, Renfu Shao, Zemin Pan . C/EBPβ expression decreases in cervical cancer and leads to tumorigenesis. BMC Cancer. 2023 Jan 24;23(1):79. doi: 10.1186/s12885-023-10543-9. PMID: 36694148; PMCID: PMC9872280. 这是我第一次作为第一作者在中科院Top期刊上发的文章,也是2023年发的第二篇文章。是群里分享的第三篇我作为作者的文章。目的是研究C/EBPβ蛋白在宫颈肿瘤发生和发展中的作用。整个过程中,我们采用定量RT-PCR分析临床标本(10例宫颈癌组织标本和10例相应正常宫颈组织标本)中C/EBPβ、miR-661和MTA1 mRNA的表达。应用免疫组织化学方法分析381例临床标本C/EBPβ、80例临床标本Ki67和60例临床标本PCNA蛋白的表达。采用MALDI-TOF MassARRAY分析C/EBPβ基因甲基化(13例宫颈癌症组织和13例相应的正常宫颈组织)。采用CCK-8分析宫颈癌症细胞系的细胞增殖情况。采用蛋白质印迹和免疫组织化学方法检测C/EBPβ蛋白的表达水平,并用定量RT-PCR分析mRNA的表达。采用流式细胞术检测细胞周期分布和细胞凋亡。进行集落形成、Transwell、细胞侵袭和伤口愈合测定以检测细胞迁移和侵袭。
通过实验,我们证明了,C/EBPβ在宫颈癌症组织中降低,C/EBP-β基因在宫颈癌症细胞中的过度表达可以抑制增殖、侵袭和迁移。
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BACKGROUND: Cervical cancer is currently estimated to be the fourth most common cancer among women worldwide and the leading cause of cancer-related deaths in some of the world's poorest countries. …
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BACKGROUND: Cervical cancer is currently estimated to be the fourth most common cancer among women worldwide and the leading cause of cancer-related deaths in some of the world's poorest countries. C/EBPβ has tumor suppressor effects because it is necessary for oncogene-induced senescence. However, C/EBPβ also has an oncogenic role. The specific role of C/EBPβ in cervical cancer as a tumor suppressor or oncoprotein is unclear.OBJECTIVE: To explore the role of the C/EBPβ protein in cervical tumorigenesis and progression.METHODS: Quantitative RT-PCR was used to analyze C/EBPβ (15 cervical cancer tissue samples and 15 corresponding normal cervical tissue samples), miR-661, and MTA1 mRNA expression in clinical samples (10 cervical cancer tissue samples and 10 corresponding normal cervical tissue samples). Immunohistochemistry was used to analyze C/EBPβ (381 clinical samples), Ki67 (80 clinical samples) and PCNA ( 60 clinical samples) protein expression. MALDI-TOF MassARRAY was used to analyze C/EBPβ gene methylation (13 cervical cancer tissues and 13 corresponding normal cervical tissues). Cell proliferation was analyzed by CCK-8 in cervical cancer cell lines. Western blotting and immunohistochemistry were performed to detect C/EBPβ protein expression levels, and mRNA expression was analyzed by quantitative RT-PCR analysis. Flow cytometry was performed to measure cell cycle distribution and cell apoptosis. Colony formation, Transwell, cell invasion, and wound healing assays were performed to detect cell migration and invasion.RESULTS: C/EBPβ protein expression was significantly reduced in cervical cancer tissues compared with cervicitis tissues (P < 0.01). Ki67 protein and PCNA protein expression levels were significantly higher in cervical cancer tissues compared with cervicitis tissues. The rate of C/EBPβ gene promoter methylation of CpG12, 13, 14 and CpG19 in cervical cancer tissues was significantly increased compared with normal cervical tissue (P < 0.05). In addition, C/EBPβ was overexpressed in cervical cancer cells and this overexpression inhibited cell proliferation, migration, invasion, arrested cells in S phase, and promoted apoptosis.CONCLUSIONS: We have demonstrated that C/EBPβ decreased in cervical cancer tissues and overexpression of the C/EBPβ gene in cervical cancer cells could inhibit proliferation, invasion and migration.
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27.
龙海晨
(2023-06-24 23:55):
#paper Weinan Zheng, Fuyuan Jin, Fang Wang, Luyue Wang, Shaowei Fu, Zemin Pan, Haichen Long. Analysis of eEF1A2 gene expression and copy number in cervical carcinoma. Medicine (Baltimore). 2023 Jan 13;102(2):e32559. doi: 10.1097/MD.0000000000032559. PMID: 36637958; PMCID: PMC9839279. 这是我第一次作为独立通讯作者发的文章也是2023年发的第一篇文章。是群里分享的第二篇我作为作者的文章。因为是阴性结果,没有发到太好的杂志。杂志要求补实验数据时,赶上疫情,封在家里,所以用生物信息学补的。这是一篇分子生物学和生物信息学相结合的文章。主要研究eEF1A2基因拷贝数与宫颈癌患者临床分期、病理分级和患者生存率之间的关系。QPCR分析样本拷贝数。生物信息学数据库分析相关数据。发现,eEF1A2基因在癌症组织中发生突变。eEF1A2基因拷贝数与子宫颈癌症组织中eEF1A1基因表达的变化无关。
Abstract:
OBJECTIVE: To explore and analyze the expression of eukaryotic translation elongation factor 1 alpha 2 (eEF1A2) gene in cervical cancer tissues, its relationship with patient survival, gene mutations, and changes …
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OBJECTIVE: To explore and analyze the expression of eukaryotic translation elongation factor 1 alpha 2 (eEF1A2) gene in cervical cancer tissues, its relationship with patient survival, gene mutations, and changes in copy number in cervical cancer and chronic cervicitis tissues.METHODS: The expression of the eEF1A2 gene in cervical cancer and its relationship with patient survival were analyzed using gene expression profile interactive analysis. Changes in eEF1A2 expression in cervical cancer tissues were analyzed using cBioPortal, a portal for cancer genomics analysis. The eEF1A2 copy number in cervical cancer tissues and chronic cervicitis tissues was determined by real-time fluorescence quantitative polymerase chain reaction. The relationship between the expression of eEF1A2 protein and the clinical stage, pathological grade, and patient survival of cervical cancer was analyzed by the database: The Human Protein Atlas, an integrated repository portal for tumor-immune system interactions.RESULTS: Gene expression profile interactive analysis database analysis showed no significant differences in the expression of eEF1A2 between cervical cancer and normal cervical tissues (P > .05). The eEF1A2 gene expression level was not correlated with the survival of cervical cancer patients (P > .05). Analysis of the cBioPortal database showed that 18 of 297 cervical cancer patients had eEF1A2 gene changes, including missense mutation, splice mutation, amplification, and messenger RNA increase. There was no significant difference in eEF1A2 gene copy number between cervical cancer and chronic cervicitis (P > .05). The Human Protein Atlas and an integrated repository portal for tumor-immune system interactions database analysis of immunohistochemical data showed that eEF1A2 protein expression was no significant difference in clinical stage, pathological grade and patient survival of cervical cancer (P > .05).CONCLUSION: The eEF1A2 gene was mutated in cervical cancer tissues. The eEF1A2 gene copy number was not associated with changes in the expression of the eEF1A2 gene in cervical cancer tissues.
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28.
龙海晨
(2023-05-23 02:52):
#paper Sun M, Ji H, Xu N, Jiang P, Qu T, Li Y. Real-world data analysis of immune checkpoint inhibitors in stage III-IV adenocarcinoma and squamous cell carcinoma. BMC Cancer. 2022 Jul 13;22(1):762. doi: 10.1186/s12885-022-09843-3. PMID: 35831785; PMCID: PMC9277844.
文章对肺癌的鳞癌和腺癌患者接受免疫检查抑制治疗immune checkpoint inhibitors (ICIs)进行回顾性研究,评估ICIs的疗效和安全性。发现,ICIs对癌症患者有良好的疗效,并显著改善ORR和PFS。objective response rate (ORR) ,客观缓解率,是一种直接衡量药物抗肿瘤活性的指标,ORR反应了肿瘤药物治疗后,肿瘤缩小或被消灭的概率。无进展生存期(progression free survival,PFS)这个名词通常用在中晚期癌症,肿瘤侵犯范围比较大,或是发生转移的病人。病人的治疗目的是控制癌细胞生长不要继续恶化,改善病人的生活品质及延长生命。例如,4期肺癌病人接受标靶药物治疗,一年无进展生存期几率是30%,表示开始治疗追踪一年后,有3成的病人能够控制住肺癌。
Abstract:
BACKGROUND: This study was designed to investigate the clinical application, efficacy, and safety of immune checkpoint inhibitors (ICIs) in the treatment of lung cancer in the real world.METHODS: A retrospective, …
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BACKGROUND: This study was designed to investigate the clinical application, efficacy, and safety of immune checkpoint inhibitors (ICIs) in the treatment of lung cancer in the real world.METHODS: A retrospective, observational analysis was conducted on patients treated with ICIs in four tertiary hospitals in the region from January 2015 to March 2021, to evaluate the clinical efficacy of ICIs single-agent or combined chemotherapy and anti-vascular drugs in the first-line or second-line treatment of patients with lung cancer.RESULTS: Three hundred and fifteen patients were enrolled in this study. In patients with stage III-IV adenocarcinoma and Squamous cell carcinoma, the objective response rate (ORR) and disease control rate (DCR) were 35.5% (87/245) and 93.5% (229/245), respectively, the median progression-free survival (PFS) was 10.8 months, and the median overall survival (OS) was not reached. A total of 132 patients received ICIs as the first-line treatment, the median treatment cycle was 8 cycles (2-20 cycles), the short-term efficacy ORR was 38.6%, DCR was 93.9%, and the median PFS was 11.4 months. One hundred thirteen patients received ICIs treatment as second-line treatment, the median treatment cycle was five cycles (2-10 cycles), the short-term efficacy ORR was 31.9%, DCR was 92.9%, and the median PFS was 10.0 months. There were no statistically significant differences in ORR, DCR, or median PFS with ICIs as the first-line treatment compared with the second-line treatment(P > 0.05). The results of subgroup analysis showed that Eastern Cooperative Oncology Group performance status (ECOG PS), epidermal growth factor receptor (EGFR) mutation status, pathological type and number of treatment lines were not correlated with median PFS(P > 0.05). However, there were statistically significant differences in programmed death-ligand 1(PD-L1) expression, corticosteroid interference, and antibiotic (Abx) treatment among all groups (P < 0.05). In terms of safety, the overall incidence of adverse reactions in 315 patients was 62.5%, and the incidence of immune-related adverse events (irAEs) was 13.7%. Grade 1-2 and 3-4 incidence of adverse events were 34.9 and 27.65%, respectively. There were four patients who experienced fatal irAEs, two cases were liver damage leading to liver failure, one case was immune related pneumonia, and one case was immune related myocarditis.CONCLUSION: In the real world, ICIs has a good effect on patients with lung cancer and significantly improves ORR and PFS.
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29.
龙海晨
(2023-04-10 13:25):
#paper Toama W, Wiederin J, Shanley R, Jewett P, Gu C, Shenoy C, Nijjar PS, Blaes AH. Impact of pectoralis muscle loss on cardiac outcome and survival in Cancer patients who received anthracycline based chemotherapy: retrospective study. BMC Cancer. 2022 Jul 13;22(1):763. doi: 10.1186/s12885-022-09882-w. PMID: 35831837; PMCID: PMC9281070. 文章回顾研究了几种癌症患者用蒽环类药物化疗后胸肌质量指数(pectoralis muscle mass index,PMI)与总体死亡率,主要心脏事件(Major Adverse Cardiovascular Events,MACE)生存率间的关系。(这里给大家解释几个专业名词MACE通俗讲解就是与心脏相关的不好的事情,例如,1,心脏原因引起的死亡;2,发生非致命的心肌梗死;3;发生非致命的心血管事件。具体点来说,日常遇到的,复发心绞痛、急性心肌梗死、严重心律失常、心力衰竭、冠心病死亡,心血管疾病事件,心衰,缺血性心血管事件,心源性死亡。PMI是计算胸肌的一个指标,有点类似于我们日常生活中的BMI,PMI:胸大肌面积 [cm 2 ]/身高2 [m 2 ])文章对474名癌症患者进行了回顾性分析,发现,接受蒽环类药物治疗的患者治疗前胸肌指数越高,发生 MACE 的风险越低。认为对化疗前检测PMI,尤其是对肌肉减少症患者化疗前进行干预预防能有效减少患者的MACE风险。
Abstract:
INTRODUCTION: The impact of pectoralis muscle mass index (PMI) on cardiac events is not well studied in cancer patients, especially in those who have received chemotherapy with high potential cardiac …
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INTRODUCTION: The impact of pectoralis muscle mass index (PMI) on cardiac events is not well studied in cancer patients, especially in those who have received chemotherapy with high potential cardiac toxicity such as anthracyclines.METHODS: Individuals aged ≥18 years with a diagnosis of breast cancer, sarcoma, or lymphoma who received anthracycline-based chemotherapy at the University of Minnesota MHealth Fairview between 2009 and 2014. Eligible patients had to have two CT scans: a baseline CT scan within 6 months prior to chemotherapy and a follow-up CT scan within 2 years after treatment. The PMI was calculated as the right pectoralis muscle area indexed to height squared. Multivariable linear regression was used to analyze factors associated with PMI at follow-up, overall mortality, and major cardiac events (MACE).RESULTS: A total of 474 patients (breast cancer 192; lymphoma 184; sarcoma 98) participated with a median age of 61 years at the time of baseline CT scan; 161 (34%) were male. Almost all patients received anthracyclines except 12% who received trastuzumab only. The median baseline PMI was 5.8 cm2/m2 (4.9, 7.7) which decreased 10.5% after chemotherapy, to 5.2 cm2/m2 (4.4, 6.4). Baseline PMI was not significantly associated with OS, but we detected lower risks of MACE with larger PMI at baseline. Greater baseline PMI was associated with greater follow-up PMI, but also with greater relative PMI loss. Female gender, older age, and history of smoking were also associated with greater PMI losses.CONCLUSION: Greater pre-treatment pectoralis muscle index in patients treated with anthracyclines have a lower risk of MACE. Early identification of sarcopenia using PMI could trigger proactive engagement for intervention and risk-stratified therapies.
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30.
龙海晨
(2023-03-16 18:02):
#paper Yan Y, Ma Z, Ji X, Liu J, Ji K, Li S, Wu Q. A potential decision-making algorithm based on endoscopic ultrasound for staging early gastric cancer: a retrospective study. BMC Cancer. 2022 Jul 13;22(1):761. doi: 10.1186/s12885-022-09870-0. PMID: 35831843; PMCID: PMC9281103. 文章是研究内镜超声分析所得到的图像与胃癌早期分型间的关系,通过研究影像中肿瘤位置,是否胃溃疡,分化程度,肿瘤大小等指标,建立相关的算法,计算肿瘤分期,确定相应的治疗方案。为早期胃癌诊断治疗提供了一种决策算法。
Abstract:
BACKGROUND: Clinical staging of gastric cancer (GC) before treatment is essential. Endoscopic ultrasound (EUS) is a recommended staging tool, but its efficacy remains controversial. Our previous prospective study evaluated the …
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BACKGROUND: Clinical staging of gastric cancer (GC) before treatment is essential. Endoscopic ultrasound (EUS) is a recommended staging tool, but its efficacy remains controversial. Our previous prospective study evaluated the potential value of EUS for T staging and presented discrepancies. In this study, we aimed to evaluate the efficacy of EUS in T staging by comparing it with pathological staging. We analyze the factors that can potentially affect accuracy to identify suitable subgroups for EUS staging.METHODS: Data from a total of 1763 consecutive patients with GC from January 2015 to December 2017 were analyzed. Results from EUS and pathological T staging were compared. The factors that might affect EUS's accuracy were analyzed.RESULTS: The sensitivity, specificity, positive predictive value, and negative predictive value of EUS in patients with early GC were 62.08%, 96.13%, 90.94%, and 80.21%, respectively. The accuracy rates of uT1, uT2-uT4, and uT3-uT4 were 90.94%, 79.02%, and 78.39%, respectively. In multivariate analysis, underestimation was more likely to be observed in patients with tumors located in the middle or upper third of the stomach. Overestimation was more likely to be observed in patients with tumors located in the lower third or those without ulcer. Other factors affecting accuracy included ulcer, differentiation, larger size and undergoing surgery.CONCLUSION: Our findings highlight the role of EUS in determining the T staging of GC. Overestimation and underestimation in T-staging were significantly associated with the tumor location in early GC, and a decision-making algorithm was proposed for clinical practice in early cancers based on these findings.
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31.
龙海晨
(2023-02-05 17:58):
#paper Feng H, Cao B, Peng X, Wei Q. Cancer-associated fibroblasts strengthen cell proliferation and EGFR TKIs resistance through aryl hydrocarbon receptor dependent signals in non-small cell lung cancer. BMC Cancer. 2022 Jul 13;22(1):764. doi: 10.1186/s12885-022-09877-7. PMID: 35831824; PMCID: PMC9281029.文章属于研究肿瘤的领域。进一步描述了CAF在癌症EGFR-TKIs耐药性发展中的作用。阐述了CAF与EGFR TKIs耐药相关的潜在机制,其依赖于Kyn/AhR/AKT/ERK信号通路。阻断AhR可有效改善EGFR TKIs的结果,为临床治疗癌症提供了一种新的策略。
Abstract:
The tumor microenvironment is a dynamic cellular milieu that interacts with cancer cells and promotes tumor progression and metastasis. However, the specific mechanisms by which the tumor microenvironment impacts cancer …
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The tumor microenvironment is a dynamic cellular milieu that interacts with cancer cells and promotes tumor progression and metastasis. However, the specific mechanisms by which the tumor microenvironment impacts cancer cells' behaviors remain poorly understood. In this study, enriched cancer-associated fibroblasts (CAFs) were observed in tumor tissues isolated from epidermal growth factor receptor tyrosine kinase inhibitors (EGFR TKIs) resistant non-small cell lung cancer (NSCLC) patients. CAFs isolated from tumor tissues were capable of producing tryptophan metabolite kynurenine (Kyn), which significantly increased the proliferation and EGFR TKIs resistance of NSCLC cells. In this study, it was further observed that the activation of tryptophan 2,3-dioxygenase (TDO) in CAFs, resulted in the enhanced capability of tryptophan metabolism in them compared to normal fibroblasts. As a result, Kyn produced by CAFs facilitated the up-regulation of Aryl Hydrocarbon Receptor (AhR) signals in NSCLC, thereby resulting in the downstream ATK and ERK signaling pathways activation. Finally, inhibition of AhR signals efficiently prevented tumor growth and development of EGFR TKIs resistance, eventually improved the outcome of EGFR TKIs, and described a promising therapeutic strategy for NSCLC.
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32.
龙海晨
(2023-01-02 13:45):
#paper Rosen D B, Murphy E A, Gejman R S, et al. Cytokine response over the course of COVID-19 infection in pregnant women[J]. Cytokine, 2022, 154: 155894.
PMID: 35490452 PMCID: PMC9035355 DOI: 10.1016/j.cyto.2022.155894
这是研究新冠的文章。发表于2022年。样本是2020年3月到4月纽约市医院的。说明一下,那时候的新冠还不是现在低毒的奥密克戎,是最早的新冠病毒。文章研究的是妊娠期孕妇感染新冠后的血清情况。还有针对相应的细胞因子的治疗。回想2020年初新闻上自媒体上好多是在新冠上黑美国。其实公共防疫各国国情不同。美国的情况把人关房子里老百姓不答应。但对于高精尖层面的研究,2020年3月的时候咱们的核酸检测都没普及。美国治疗方法都到了对应不同人群和不同细胞因子的研究。文章对比分析了新冠阴性和阳性的孕妇细胞因子的水平。以及阳性孕妇不同感染时期各种细胞因子的水平。发现晚期妊娠妇女的细胞因子谱随感染的时间进程而变化,并与临床严重程度相关。
Abstract:
OBJECTIVE: To study how severity and progression of coronavirus disease (COVID-19) affect cytokine profiles in pregnant women.MATERIALS AND METHODS: 69 third-trimester, pregnant women were tested for COVID-19 infection and SARS-CoV-2 …
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OBJECTIVE: To study how severity and progression of coronavirus disease (COVID-19) affect cytokine profiles in pregnant women.MATERIALS AND METHODS: 69 third-trimester, pregnant women were tested for COVID-19 infection and SARS-CoV-2 specific IgM and IgG antibodies. Patients were stratified according to SARS-CoV-2 Reverse Transcriptase-PCR (RT-PCR) status and serology (IgM and IgG) status. Cytokines G-CSF, HGF, IL-18, IL-1Ra, IL-2Ra, IL-8, and IP-10 were measured via ELISA. Retrospective chart review for COVID-19 symptoms and patient vitals was conducted, and cytokine levels were compared between SARS-CoV-2 positive and negative cohorts, by seronegative and seropositive infection, by time course since onset of infection, and according to NIH defined clinical severity.RESULTS: IL-18, IL-1Ra, and IP-10 increased in the 44 RT-PCR positive pregnant women compared to the 25 RT-PCR negative pregnant controls. Elevated cytokine levels were found in early infections, defined by positive RT-PCR and seronegative status, and higher cytokine levels were also associated with more severe disease. By IgM seroconversion, IL-8 and IP-10 returned to levels seen in uninfected patients, while IL-18 levels remained significantly elevated.CONCLUSION: Cytokine profiles of third-trimester pregnant women vary with the time course of infection and are correlated with clinical severity.
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33.
龙海晨
(2022-12-01 17:34):
#paper Wang L, Jiang D, Zhang L. A thermophilic 8-oxoguanine DNA glycosylase from Thermococcus barophilus Ch5 is a new member of AGOG DNA glycosylase family[J]. Acta biochimica et biophysica Sinica.PMID: 35713316 DOI: 10.3724/abbs.2022072
DNA中的8-氧代胍(8oxoguanine,8oxoG)是一种主要的氧化碱基,对基因组稳定性构成严重威胁。细胞已经进化出8oxoG-DNA糖苷酶(OGG)来抵消8oxoG在DNA中产生的诱变。目前,OGG酶分为三个家族:OGG1、OGG2和AGOG。文章研究发现,来自超嗜热性欧氏菌T嗜酸乳杆菌Ch5的Tb-AGOG能在75-95摄氏度pH9.0的时候去除8oxoG有最大效率。Tb-AGOG是一种双功能DNA糖苷酶,具有糖苷酶活性和AP裂解酶活性。文章阐述了AGOG的作用机制。Tb-AGOG中的残基D41和D229对催化至关重要。
IF:3.300Q1
Acta biochimica et biophysica Sinica,
2022-06-25.
DOI: 10.3724/abbs.2022072
PMID: 35713316
Abstract:
8-Oxoguanine (8oxoG) in DNA is a major oxidized base that poses a severe threat to genome stability. To counteract the mutagenic effect generated by 8oxoG in DNA, cells have evolved …
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8-Oxoguanine (8oxoG) in DNA is a major oxidized base that poses a severe threat to genome stability. To counteract the mutagenic effect generated by 8oxoG in DNA, cells have evolved 8oxoG DNA glycosylase (OGG) that can excise this oxidized base from DNA. Currently, OGG enzymes have been divided into three families: OGG1, OGG2 and AGOG (archaeal 8oxoG DNA glycosylase). Due to the limited reports, our understanding on AGOG enzymes remains incomplete. Herein, we present evidence that an AGOG from the hyperthermophilic euryarchaeon Ch5 (Tb-AGOG) excises 8oxoG from DNA at high temperature. The enzyme displays maximum efficiency at 75°C-95°C and at pH 9.0. As expected, Tb-AGOG is a bifunctional glycosylase that harbors glycosylase activity and AP (apurinic/apyrimidinic) lyase activity. Importantly, we reveal for the first time that residue D41 in Tb-AGOG is essential for 8oxoG excision and intermediate formation, but not essential for DNA binding or AP cleavage. Furthermore, residue E79 in Tb-AGOG is essential for 8oxoG excision and intermediate formation, and is partially involved in DNA binding and AP cleavage, which has not been described among the reported AGOG members to date. Overall, our work provides new insights into catalytic mechanism of AGOG enzymes.
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34.
龙海晨
(2022-11-01 23:04):
#paper Vicente M, Schlebusch C M. African population history: an ancient DNA perspective[J]. Current Opinion in Genetics & Development, 2020, 62: 8-15. PMID: 32563853 DOI: 10.1016/j.gde.2020.05.008
上次我分享了基因和考古相关的一篇实验论著,结果几天后公布的诺贝尔奖和这项技术相关。发现群里不少人对这个方向感兴趣。这次给大家推荐一篇综述。这篇综述所涉及的领域就是通过一个古老的DNA视角去看非洲的人口历史。如果对于基因考古感兴趣的朋友,除了这篇综述之外,该综述的参考文献也推荐阅读。这篇文章通过总结相关的研究文献。通过研究非洲大陆现代人类,古代人类,远古人类的遗传基因,与考古发现相关联对比,研究非洲大陆从狩猎采集到农耕文明以及现代的文明发展。从现代和史前非洲人的不同群体中获得完整的基因组数据。随着这项技术的发展,未来的古代DNA研究有望
揭示更详细的非洲人类史前故事。人类的历史研究以前通过考古文字,基因技术的加入,可以把研究人类的历史推进到没有文字没有金属的远古时代。基因技术不仅研究未来,也研究过去。文章介绍了考古所用的ancient DNA 的技术发展。在非洲大陆上考古,各个地区,国家,部落,文明的研究与基因技术考古的运用。对基因考古人类文明感兴趣的朋友,推荐阅读该文章和文章的参考文献。
IF:3.700Q2
Current opinion in genetics & development,
2020-06.
DOI: 10.1016/j.gde.2020.05.008
PMID: 32563853
Abstract:
The history of human populations in Africa is complex and includes various demographic events that influenced patterns of genetic variation across the continent. Through genetic studies of modern-day, and most …
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The history of human populations in Africa is complex and includes various demographic events that influenced patterns of genetic variation across the continent. Through genetic studies of modern-day, and most recently, ancient African genetic variation, it became evident that deep African history is captured by the relationships among hunter-gatherers. Furthermore, it was shown that agriculture had a large influence on the distribution of current-day Africans. These later population movements changed the demographic face of the continent and descendants of farming groups today form the majority populations across Africa. Ancient DNA methods are continually evolving, and we see evidence of this in how research has advanced in the last decade. With the increased availability of full genomic data from diverse sets of modern-day and prehistoric Africans we now have more power to infer human demography. Future ancient DNA research promises to reveal more detailed stories of human prehistory in Africa.
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35.
龙海晨
(2022-10-01 21:58):
#paper Rowold D, Garcia-Bertrand R, Calderon S, Rivera L, Benedico DP, Alfonso Sanchez MA, Chennakrishnaiah S, Varela M, Herrera RJ. At the southeast fringe of the Bantu expansion: genetic diversity and phylogenetic relationships to other sub-Saharan tribes. Meta Gene. 2014 Oct 2;2:670-85. doi: 10.1016/j.mgene.2014.08.003. PMID: 25606451; PMCID: PMC4287857. 这是一篇研究撒哈拉以南的非洲的部落扩张的文章,介绍这篇文章,主要是因为咱们群里是多学科融合,我觉得咱们可以逐步开展合作。一般来说,研究几个文明的关系,通常可能从考古,人文,文化方面。这篇文章是通过对基因的分析研究来论证一个种族部落文明的迁徙发展的。通过对基因的研究分析,画出了班图人发源,迁徙,发展的路线。相当于把基因研究、数据分析运用在人文研究方面做出某些论证。咱们群里也可以试着开展合作。
Abstract:
Here, we present 12 loci paternal haplotypes (Y-STR profiles) against the backdrop of the Y-SNP marker system of Bantu males from the Maputo Province of Southeast Africa, a region believed …
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Here, we present 12 loci paternal haplotypes (Y-STR profiles) against the backdrop of the Y-SNP marker system of Bantu males from the Maputo Province of Southeast Africa, a region believed to represent the southeastern fringe of the Bantu expansion. Our Maputo Bantu group was analyzed within the context of 27 geographically relevant reference populations in order to ascertain its genetic relationship to other Bantu and non Bantu (Pygmy, Khoisan and Nilotic) sub-equatorial tribes from West and East Africa. This study entails statistical pair wise comparisons and multidimensional scaling based on YSTR Rst distances, network analyses of Bantu (B2a-M150) and Pygmy (B2b-M112) lineages as well as an assessment of Y-SNP distribution patterns. Several notable findings include the following: 1) the Maputo Province Bantu exhibits a relatively close paternal affinity with both east and west Bantu tribes due to high proportion of Bantu Y chromosomal markers, 2) only traces of Khoisan (1.3%) and Pygmy (1.3%) markers persist in the Maputo Province Bantu gene pool, 3) the occurrence of R1a1a-M17/M198, a member of the Eurasian R1a-M420 branch in the population of the Maputo Province, may represent back migration events and/or recent admixture events, 4) the shared presence of E1b1b1-M35 in all Tanzanian tribes examined, including Bantu and non-Bantu groups, in conjunction with its nearly complete absence in the West African populations indicate that, in addition to a shared linguistic, cultural and genetic heritage, geography (e.g., east vs. west) may have impacted the paternal landscape of sub-Saharan Africa, 5) the admixture and assimilation processes of Bantu elements were both highly complex and region-specific.
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36.
龙海晨
(2022-09-01 12:18):
#paper Luo F, Lin K. N6-methyladenosine (m6A) reader IGF2BP1 accelerates gastric cancer aerobic glycolysis in c-Myc-dependent manner[J]. Experimental Cell Research, 2022, 417(1): 113176. PMID: 35489385
DOI: 10.1016/j.yexcr.2022.113176
该文章研究了N 6-甲基腺苷(m 6 A),RNA m 6 A reader IGF2BP1 在胃癌发生发展中的作用。m 6 A参与调节多种癌症中的癌细胞增殖、转移、形成。文章分析了IGF2BP1在胃癌(gastric cancer,GC)中的功能和机制。研究结果表明,IGF2BP1 在 GC 组织中上调,可作为 GC 患者预后不良的预测因子。在功能上,IGF2BP1 促进体外 GC 细胞迁移和有氧糖酵解。IGF2BP1 敲低抑制了体内肿瘤的生长。文章证明了 IGF2BP1 通过 m6A 依赖性方式直接与 c-MYC mRNA 相互作用。文章发现,m 6 A reader IGF2BP1 以依赖 m 6 A/c-Myc 方式促进了 GC 的致癌性,这可能为 GC 提供治疗策略。
Abstract:
The N-methyladenosine (mA) is involved in the regulation of cell proliferation and metastasis formation in multiple cancers. However, the biological significance of RNA mA reader IGF2BP1 and the modification of …
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The N-methyladenosine (mA) is involved in the regulation of cell proliferation and metastasis formation in multiple cancers. However, the biological significance of RNA mA reader IGF2BP1 and the modification of IGF2BP1 itself have not been fully investigated. Here, we analyzed the functions and mechanism of IGF2BP1 in gastric cancer (GC). Results showed that IGF2BP1 upregulated in GC tissue and acted as a predictor of poor prognosis for GC patients. Functionally, IGF2BP1 promoted the migration and aerobic glycolysis of GC cells in vitro. Moreover, IGF2BP1 knockdown repressed the tumor growth in vivo. We also demonstrated that IGF2BP1 directly interacted with c-MYC mRNA via m6A-dependent manner to by stabilize its stability. Overall, these findings demonstrated that mA reader IGF2BP1 facilitated the carcinogenic of GC in mA/c-Myc-dependent manner, which might provide critical therapeutic strategy for GC.
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37.
龙海晨
(2022-08-02 17:38):
#paper Lu W, Ren S, Dong W, et al. Albumin-induced premature senescence in human renal proximal tubular cells and its relationship with intercellular fibrosis[J]. Acta Biochimica et Biophysica Sinica, 2022.PMID: 35713317
DOI: 10.3724/abbs.2022055
文章探讨白蛋白诱导的早衰对肾小管纤维化的影响及其可能作用的机制。通过使用不同浓度的牛血清白蛋白(BSA)以及是否加入si-p21刺激HK-2细胞进行实验,并以SA-
β-半乳糖活性、衰老相关分泌表型(SASP)、层粘连蛋白B1被用作衰老的标志物。HK-2细胞在BSA刺激下,阻滞在G2/M期的细胞显著增加,p21、pCDC25C和p-CDK1的表达水平升高,纤维生成增加。当p21表达受到抑制时,pCDC25C和p-CDK1的表达水平降低,G2/M期阻滞得到改善,从而减少细胞凋亡的产生,同时减少纤维生成。实验证明BSA诱导一系列衰老表型。激活HK-2细胞中p21的表达,p21通过CDC25C/CDK1途径,调节细胞周期阻滞在G2/M期,这些变化导致早衰,最终导致纤维化增加。
IF:3.300Q1
Acta biochimica et biophysica Sinica,
2022-Jul-25.
DOI: 10.3724/abbs.2022055
PMID: 35713317
Abstract:
The presence of senescent cells is associated with renal fibrosis. This study aims to investigate the effect of albumin-induced premature senescence on tubulointerstitial fibrosis and its possible mechanism . Different …
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The presence of senescent cells is associated with renal fibrosis. This study aims to investigate the effect of albumin-induced premature senescence on tubulointerstitial fibrosis and its possible mechanism . Different concentrations of bovine serum albumim (BSA) with or without si-p21 are used to stimulate HK-2 cells for 72 h, and SA-β-gal activity, senescence-associated secretory phenotypes (SASPs), LaminB1 are used as markers of senescence. Immunofluorescence staining is performed to characterize the G2/M phase arrest between the control and BSA groups. Alterations in the DNA damage marker γ-H2AX, fibrogenesis, and associated proteins at the G2/M phase, such as p21, p-CDC25C and p-CDK1, are evaluated. Compared with those in the control group, the SA-β-gal activity, SASP, and γ-H2AX levels are increased in the BSA group, while the level of LaminB1 is decreased. Meanwhile, HK-2 cells blocked at the G2/M phase are significantly increased under the stimulation of BSA, and the levels of p21, p-CDC25C and p-CDK1, as well as fibrogenesis are also increased. When p21 expression is inhibited, the levels of p-CDC25C and p-CDK1 are decreased and the G2/M phase arrest is improved, which decreases the production of fibrogenesis. In conclusion, BSA induces renal tubular epithelial cell premature senescence, which regulates the G2/M phase through the CDC25C/CDK1 pathway, leading to tubulointerstitial fibrosis.
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38.
龙海晨
(2022-07-02 20:10):
#paper Zheng Y, Jönsson J, Hao C, et al. hnRNP A1 and hnRNP A2 inhibit splicing to HPV16 splice site SA409 through a UAG-containing sequence in the E7 coding region[J]. Journal of Virology, 2020. DOI: 10.1128/jvi.01509-20 PMID: 32759322 PMCID: PMC7527060 该文章研究发现hnRNP A1和hnRNP A2通过E7编码区中含有UAG的序列抑制HPV16剪接位点SA409的剪接。人乳头瘤病毒16型(HPV16)属于HPV的高危型,并导致多种肛门,生殖器癌和头颈癌,一般大家最熟悉的就是宫颈癌,实际上高危型HPV可以引发多种癌症。HPV16的两种蛋白E6和E7可防止细胞凋亡并促进有丝分裂,对HPV16生命周期的完成、感染细胞的转化和恶性肿瘤的维持至关重要。E6和E7由两个通过选择性剪接以互斥方式生成的mRNA产生。虽然E6蛋白是由未拼接的mRNA制成的,但E7是由相同前体mRNA的拼接版本制成的。由于恶性转化需要足够数量的E6和E7,这种复杂的基因表达排列使得E6和E7的表达容易受到外部干扰。由于没有针对HPV16的抗病毒药物,详细了解HPV16 E6和E7 mRNA剪接的调节可能会发现新的治疗靶点。文章可总结为:1. E6,E7是HPV的重要蛋白他们对HPV的繁殖至关重要同时可以改变宿主的基因导致癌症。 2. E6,E7由HPV的同一段基因上的位点来调控。 3. 受到hnRNA1或者hnRNA2的调节,位点会做出不同反应从而影响E6或者E7的产生。hnRNP A1和A2对E6编码区这个非常脆弱的HPV16剪接事件有相反的影响。 4. hnrnpa1和A2对hpv16mrna剪接的影响差异主要是由于这两种蛋白的C端保守程度较低。结果还表明,hnRNP A2与其他下游RNA序列相互作用,以促进剪接到下游的3′-剪接SA742,而不是导致内含子保留在E6编码区。
Abstract:
Human papillomavirus type 16 (HPV16) belongs to the high-risk-group of HPVs and is causing a variety of anogenital cancers and head and neck cancer. The two HPV16 oncoproteins E6 and …
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Human papillomavirus type 16 (HPV16) belongs to the high-risk-group of HPVs and is causing a variety of anogenital cancers and head and neck cancer. The two HPV16 oncoproteins E6 and E7 prevent apoptosis and promote mitosis and are essential for completion of the HPV16 life cycle and for transformation of the infected cell and maintenance of malignancy. E6 and E7 are produced from two mRNAs that are generated in a mutually exclusive manner by alternative splicing. While E6 protein is made from the unspliced mRNA, E7 is made from the spliced version of the same pre-mRNA. Since sufficient quantities of both E6 and E7 are required for malignant transformation, this intricate arrangement of gene expression renders E6 and E7 expression vulnerable to external interference. Since antiviral drugs to HPV16 are not available, a detailed knowledge of the regulation of HPV16 E6 and E7 mRNA splicing may uncover novel targets for therapy.
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39.
龙海晨
(2022-06-10 12:26):
#paper Ropio J, Chebly A, Ferrer J, Prochazkova-Carlotti M, Idrissi Y, Azzi-Martin L, Cappellen D, Pham-Ledard A, Soares P, Merlio JP, Chevret E. Reliable blood cancer cells' telomere length evaluation by qPCR. Cancer Med. 2020 May;9(9):3153-3162. doi: 10.1002/cam4.2816. Epub 2020 Mar 6. PMID: 32142223; PMCID: PMC7196062.题目:Reliable blood cancer cells' telomere length evaluation by qPCR
端粒缩短与一系列不同的人类疾病有关,因此需要可靠的测量方法来揭示这种关联。在众多端粒长度测量方法中,qPCR被认为是一种易于进行且经济高效的方法,可以研究DNA含量较低的样本。文章采用采用相对和绝对qPCR方法检测癌细胞端粒长度。qPCR数据与terminal restriction fragment (TRF),(端粒长度测量“金标准”)测量值进行比较。从每个样品(细胞系、患者和健康供体)的重复反应中收集数据。当重复中 Ct 的标准偏差低于 0.5 时,接受重复值。qPCR 估计的平均细胞系端粒长度(4.320 ± 0.143 kb)与 TRF 估计的(5.652 kb).相似,P = 0.5040。对基于 qPCR 的技术,测量端粒长度要求使用高质量的 DNA,当DNA降解严重时,QPCR的测量不准确。如果QPCR法测量端粒长度的细胞是癌细胞,那关键点在于选择合适的参考基因,因为癌细胞的增殖不像正常细胞那样规范,癌细胞增殖时有些基因会丢失,癌细胞还会积累遗传和染色体异常。
Abstract:
BACKGROUND: Telomere shortening is linked to a range of different human diseases, hence reliable measurement methods are needed to uncover such associations. Among the plethora of telomere length measurement methods, …
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BACKGROUND: Telomere shortening is linked to a range of different human diseases, hence reliable measurement methods are needed to uncover such associations. Among the plethora of telomere length measurement methods, qPCR is reported as easy to conduct and a cost-effective approach to study samples with low DNA amounts.METHODS: Cancer cells' telomere length was evaluated by relative and absolute qPCR methods.RESULTS: Robust and reproducible telomere length measurements were optimized taking into account a careful reference gene selection and by knowing the cancer cells ploidy. qPCR data were compared to "gold standard" measurement from terminal restriction fragment (TRF).CONCLUSIONS: Our study provides guidance and recommendations for accurate telomere length measurement by qPCR in cancer cells, taking advantage of our expertise in telomere homeostasis investigation in primary cutaneous T-cell lymphomas. Furthermore, our data emphasize the requirement of samples with both, high DNA quality and high tumor cells representation.
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40.
龙海晨
(2022-05-12 11:23):
#paper Artesunate exhibits synergistic anti-cancer effects with cisplatin on lung cancer A549 cells by inhibiting MAPK pathway
PMID: 32898605 GENE杂志Gene 2021 Jan 15;766:145134.
doi: 10.1016/j.gene.2020.145134. Epub 2020 Sep 6.
DOI: 10.1016/j.gene.2020.145134
文章研究了青蒿琥酯(Artesunate,ART)与顺铂(cisplatin,CIS)联合发挥抗肺癌作用。使用A549肺癌细胞系进行研究。发现ART加大剂量获延长使用时间均能抑制细胞增殖。且ART与CIS联合使用,抑癌效果要显著强于单独用ART获单独用CIS,使用裸鼠进行动物实验也得到了同样结果。并证明,联合效果是通过P38/JNK/ERK MAPK信号通路发挥作用。
Abstract:
BACKGROUND: Artesunate (ART) has been used extensively as anti-malarial drugs worldwide. Besides, it has also been reported to have anti-cancer activities. This study was aimed to explore the anti-cancer activity …
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BACKGROUND: Artesunate (ART) has been used extensively as anti-malarial drugs worldwide. Besides, it has also been reported to have anti-cancer activities. This study was aimed to explore the anti-cancer activity of ART in combination with cisplatin (CIS) on A549 cells.METHODS: Cells were cultured with different concentrations of ART and/or CIS for 24, 48, or 72 h to test the anti-proliferative effects by CCK-8 assay. Colony formation assay and EdU staining were also performed. TUNEL staining was used to illustrate the morphologic changes. Cell cycle and apoptosis were determined by flow cytometry assay, and Western blot analysis was conducted to detect the expression of apoptosis- and proliferation-related proteins. Caspase activities were determined by colorimetric assay kit. Moreover, the synergistic effect of ART with CIS in A549 cell xenograft model was also determined.RESULTS: ART significantly inhibited cell proliferation in dose- and time-dependent manners. Collectively, the combination treatment remarkably decreased colony formation rates and increased the rates of TUNEL-positive cells compared with mono-treatment. Mechanistically, the combination treatment influenced the expression of Bcl-2, Bax, p-P53, Caspase-3/7, Caspase-9, CyclinB1, P34, P21, and synergistically regulated the activity of P38/JNK/ERK1/2 MAPK pathway. In mice A549 xenograft tumors, the combination strategy significantly increased the anti-cancer efficacy of ART and CIS alone, consistent with the in vitro observations.CONCLUSIONS: ART exhibited significant anti-tumor effect on A549 cells and this efficiency could be enhanced by combination with CIS.
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