来自杂志 Nature Communications 的文献。
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1.
翁凯 (2025-01-01 01:23):
#paper DOI: 10.1038/s41467-024-52615-9. Nature Communications, 2024. The estrogen response in fibroblasts promotes ovarian metastases of gastric cancer. 这篇论文探索了女性胃癌往卵巢的转移在绝经前高发的机制。主要利用单细胞转录组技术,作者发现绝经前女性的雌激素和雌激素受体(ER)水平较高,而雌激素在卵巢转移中起到了关键的促进作用。具体来说,卵巢成纤维细胞表达高水平的ER,并且在雌激素的刺激下,这些成纤维细胞分泌Midkine(MDK),而MDK通过与低密度脂蛋白受体相关蛋白1(LRP1)结合,促进胃癌细胞的迁移和侵袭,从而增强了卵巢转移的能力。
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小年 (2024-12-31 11:46):
#paper doi:10.1038/s41467-022-29336-y Distinct genomic landscape of Chinese pediatric acute myeloid leukemia impacts clinical risk classification. Nat Commun 13, 1640 (2022). 研究团队进行了中国儿童AML全基因组和转录组学研究,分析了驱动因子(突变特征)改变及其预后相关性,发现中国和西方儿童AML患者的基因突变谱存在显著差异。同时,研究人员提出了一种改进的预后风险分类模型,能够更好地反映中国儿童AML患者的不良事件风险。该研究强调了群体遗传背景在精准医学中的重要性。
Abstract:
AbstractStudies have revealed key genomic aberrations in pediatric acute myeloid leukemia (AML) based on Western populations. It is unknown to what extent the current genomic findings represent populations with different … >>>
AbstractStudies have revealed key genomic aberrations in pediatric acute myeloid leukemia (AML) based on Western populations. It is unknown to what extent the current genomic findings represent populations with different ethnic backgrounds. Here we present the genomic landscape of driver alterations of Chinese pediatric AML and discover previously undescribed genomic aberrations, including the XPO1-TNRC18 fusion. Comprehensively comparing between the Chinese and Western AML cohorts reveal a substantially distinct genomic alteration profile. For example, Chinese AML patients more commonly exhibit mutations in KIT and CSF3R, and less frequently mutated of genes in the RAS signaling pathway. These differences in mutation frequencies lead to the detection of previously uncharacterized co-occurring mutation pairs. Importantly, the distinct driver profile is clinical relevant. We propose a refined prognosis risk classification model which better reflected the adverse event risk for Chinese AML patients. These results emphasize the importance of genetic background in precision medicine. <<<
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3.
庞庞 (2024-11-30 16:27):
#paper doi:10.1038/s41467-024-44863-6 Structural connectome architecture shapes the maturation of cortical morphology from childhood to adolescence 文章探究了发育时期皮层的改变情况,主要在前额叶和顶叶发生改变。同时,发现皮层变薄是被白质网络结构约束的,约束的力度在不同大脑节点具有异质性,并且具有不同的基因机制。
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AbstractCortical thinning is an important hallmark of the maturation of brain morphology during childhood and adolescence. However, the connectome-based wiring mechanism that underlies cortical maturation remains unclear. Here, we show … >>>
AbstractCortical thinning is an important hallmark of the maturation of brain morphology during childhood and adolescence. However, the connectome-based wiring mechanism that underlies cortical maturation remains unclear. Here, we show cortical thinning patterns primarily located in the lateral frontal and parietal heteromodal nodes during childhood and adolescence, which are structurally constrained by white matter network architecture and are particularly represented using a network-based diffusion model. Furthermore, connectome-based constraints are regionally heterogeneous, with the largest constraints residing in frontoparietal nodes, and are associated with gene expression signatures of microstructural neurodevelopmental events. These results are highly reproducible in another independent dataset. These findings advance our understanding of network-level mechanisms and the associated genetic basis that underlies the maturational process of cortical morphology during childhood and adolescence. <<<
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4.
哪有情可长 (2024-09-30 17:09):
#paper An ethylene biosynthesis enzyme controls quantitative variation in maize ear length and kernel yield, Nature Communications, 05 October 2021, DOI:10.1038/s41467-021-26123-z. 玉米穗的大小和粒数在不同品种间有所差异,然而关于穗长及其对粒数影响的分子基础所知甚少。玉米雌穗授粉后,由花序分生组织(IM)衍生的小穗分生组织(SMs)发育成籽粒,因此,IM的生长发育决定了玉米花序上的小穗和籽粒的数量。作者鉴定出一个qEL7的数量性状位点,该位点控制穗长、籽粒数目和育性,利用NIL群体发现qEL7SL17和qEL7Ye478在穗长、花期、行粒数、百粒重、穗重之间存在显著的差异。后续对SMs统计发现qEL7Ye478 长穗 NIL 品种中的小花败育率(~18.7%)显著低于 qEL7SL17 短穗 NIL 品种中的小花败育率(~44.7%)。这些结果表明,长穗 qEL7Ye478 中玉米粒的增多是由于发育成种子的小花比例更高,而不是由于小花产量增加。利用精细定位确定一个Zm0001d020686的基因为候选基因,该基因编码 1-氨基环丙烷-1-羧酸氧化酶 2 (ACO2),称之为 ZmACO2。对来自 QTL 亲本的 ZmACO2 进行测序,发现其 5ʹ-非翻译区 (UTR) 和启动子区中有 5 个插入/缺失 (InDels) 和 11 个单核苷酸多态性 (SNP),但编码区中的序列完全相同 。与非编码区域的这些差异一致,ZmACO2 在发育中的穗中的表达在亲本系中存在差异,长穗 qEL7Ye478 系中的表达低于短穗 qEL7SL17 系 (P < 0.01) 。这些结果表明启动子中的序列变异导致 qEL7Ye478 和 qEL7SL17 之间 ZmACO2 表达和穗表型的差异。该基因在乙烯生物合成的最后一步起作用,并特定表达于发育中的花序域中。通过编辑ZmACO2基因确认qEL7,导致发育中穗的乙烯产量减少,并促进分生组织和花朵发展,结果使得杂交种每穗谷物产量增加了约13.4%。最后作者提出,乙烯是花序发展中的关键信号,影响小穗数量、花的育性、穗长和粒数,并且还提供了一种通过优化玉米或其他谷物中的乙烯水平来提高谷物生产力的工具。
Abstract:
AbstractMaize ear size and kernel number differ among lines, however, little is known about the molecular basis of ear length and its impact on kernel number. Here, we characterize a … >>>
AbstractMaize ear size and kernel number differ among lines, however, little is known about the molecular basis of ear length and its impact on kernel number. Here, we characterize a quantitative trait locus, qEL7, to identify a maize gene controlling ear length, flower number and fertility. qEL7 encodes 1-aminocyclopropane-1- carboxylate oxidase2 (ACO2), a gene that functions in the final step of ethylene biosynthesis and is expressed in specific domains in developing inflorescences. Confirmation of qEL7 by gene editing of ZmACO2 leads to a reduction in ethylene production in developing ears, and promotes meristem and flower development, resulting in a ~13.4% increase in grain yield per ear in hybrids lines. Our findings suggest that ethylene serves as a key signal in inflorescence development, affecting spikelet number, floral fertility, ear length and kernel number, and also provide a tool to improve grain productivity by optimizing ethylene levels in maize or in other cereals. <<<
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