来自用户 龙海晨 的文献。
当前共找到 46 篇文献分享,本页显示第 41 - 46 篇。
41.
龙海晨 (2022-07-02 20:10):
#paper Zheng Y, Jönsson J, Hao C, et al. hnRNP A1 and hnRNP A2 inhibit splicing to HPV16 splice site SA409 through a UAG-containing sequence in the E7 coding region[J]. Journal of Virology, 2020. DOI: 10.1128/jvi.01509-20 PMID: 32759322 PMCID: PMC7527060 该文章研究发现hnRNP A1和hnRNP A2通过E7编码区中含有UAG的序列抑制HPV16剪接位点SA409的剪接。人乳头瘤病毒16型(HPV16)属于HPV的高危型,并导致多种肛门,生殖器癌和头颈癌,一般大家最熟悉的就是宫颈癌,实际上高危型HPV可以引发多种癌症。HPV16的两种蛋白E6和E7可防止细胞凋亡并促进有丝分裂,对HPV16生命周期的完成、感染细胞的转化和恶性肿瘤的维持至关重要。E6和E7由两个通过选择性剪接以互斥方式生成的mRNA产生。虽然E6蛋白是由未拼接的mRNA制成的,但E7是由相同前体mRNA的拼接版本制成的。由于恶性转化需要足够数量的E6和E7,这种复杂的基因表达排列使得E6和E7的表达容易受到外部干扰。由于没有针对HPV16的抗病毒药物,详细了解HPV16 E6和E7 mRNA剪接的调节可能会发现新的治疗靶点。文章可总结为:1. E6,E7是HPV的重要蛋白他们对HPV的繁殖至关重要同时可以改变宿主的基因导致癌症。 2. E6,E7由HPV的同一段基因上的位点来调控。 3. 受到hnRNA1或者hnRNA2的调节,位点会做出不同反应从而影响E6或者E7的产生。hnRNP A1和A2对E6编码区这个非常脆弱的HPV16剪接事件有相反的影响。 4. hnrnpa1和A2对hpv16mrna剪接的影响差异主要是由于这两种蛋白的C端保守程度较低。结果还表明,hnRNP A2与其他下游RNA序列相互作用,以促进剪接到下游的3′-剪接SA742,而不是导致内含子保留在E6编码区。
IF:4.000Q2 Journal of Virology, 2020. DOI: 10.1128/jvi.01509-20
Abstract:
Human papillomavirus type 16 (HPV16) belongs to the high-risk-group of HPVs and is causing a variety of anogenital cancers and head and neck cancer. The two HPV16 oncoproteins E6 and … >>>
Human papillomavirus type 16 (HPV16) belongs to the high-risk-group of HPVs and is causing a variety of anogenital cancers and head and neck cancer. The two HPV16 oncoproteins E6 and E7 prevent apoptosis and promote mitosis and are essential for completion of the HPV16 life cycle and for transformation of the infected cell and maintenance of malignancy. E6 and E7 are produced from two mRNAs that are generated in a mutually exclusive manner by alternative splicing. While E6 protein is made from the unspliced mRNA, E7 is made from the spliced version of the same pre-mRNA. Since sufficient quantities of both E6 and E7 are required for malignant transformation, this intricate arrangement of gene expression renders E6 and E7 expression vulnerable to external interference. Since antiviral drugs to HPV16 are not available, a detailed knowledge of the regulation of HPV16 E6 and E7 mRNA splicing may uncover novel targets for therapy. <<<
翻译
42.
龙海晨 (2022-06-10 12:26):
#paper Ropio J, Chebly A, Ferrer J, Prochazkova-Carlotti M, Idrissi Y, Azzi-Martin L, Cappellen D, Pham-Ledard A, Soares P, Merlio JP, Chevret E. Reliable blood cancer cells' telomere length evaluation by qPCR. Cancer Med. 2020 May;9(9):3153-3162. doi: 10.1002/cam4.2816. Epub 2020 Mar 6. PMID: 32142223; PMCID: PMC7196062.题目:Reliable blood cancer cells' telomere length evaluation by qPCR 端粒缩短与一系列不同的人类疾病有关,因此需要可靠的测量方法来揭示这种关联。在众多端粒长度测量方法中,qPCR被认为是一种易于进行且经济高效的方法,可以研究DNA含量较低的样本。文章采用采用相对和绝对qPCR方法检测癌细胞端粒长度。qPCR数据与terminal restriction fragment (TRF),(端粒长度测量“金标准”)测量值进行比较。从每个样品(细胞系、患者和健康供体)的重复反应中收集数据。当重复中 Ct 的标准偏差低于 0.5 时,接受重复值。qPCR 估计的平均细胞系端粒长度(4.320 ± 0.143 kb)与 TRF 估计的(5.652 kb).相似,P = 0.5040。对基于 qPCR 的技术,测量端粒长度要求使用高质量的 DNA,当DNA降解严重时,QPCR的测量不准确。如果QPCR法测量端粒长度的细胞是癌细胞,那关键点在于选择合适的参考基因,因为癌细胞的增殖不像正常细胞那样规范,癌细胞增殖时有些基因会丢失,癌细胞还会积累遗传和染色体异常。
IF:2.900Q2 Cancer medicine, 2020-05. DOI: 10.1002/cam4.2816 PMID: 32142223 PMCID:PMC7196062
Abstract:
BACKGROUND: Telomere shortening is linked to a range of different human diseases, hence reliable measurement methods are needed to uncover such associations. Among the plethora of telomere length measurement methods, … >>>
BACKGROUND: Telomere shortening is linked to a range of different human diseases, hence reliable measurement methods are needed to uncover such associations. Among the plethora of telomere length measurement methods, qPCR is reported as easy to conduct and a cost-effective approach to study samples with low DNA amounts.METHODS: Cancer cells' telomere length was evaluated by relative and absolute qPCR methods.RESULTS: Robust and reproducible telomere length measurements were optimized taking into account a careful reference gene selection and by knowing the cancer cells ploidy. qPCR data were compared to "gold standard" measurement from terminal restriction fragment (TRF).CONCLUSIONS: Our study provides guidance and recommendations for accurate telomere length measurement by qPCR in cancer cells, taking advantage of our expertise in telomere homeostasis investigation in primary cutaneous T-cell lymphomas. Furthermore, our data emphasize the requirement of samples with both, high DNA quality and high tumor cells representation. <<<
翻译
43.
龙海晨 (2022-05-12 11:23):
#paper Artesunate exhibits synergistic anti-cancer effects with cisplatin on lung cancer A549 cells by inhibiting MAPK pathway PMID: 32898605 GENE杂志Gene 2021 Jan 15;766:145134. doi: 10.1016/j.gene.2020.145134. Epub 2020 Sep 6. DOI: 10.1016/j.gene.2020.145134 文章研究了青蒿琥酯(Artesunate,ART)与顺铂(cisplatin,CIS)联合发挥抗肺癌作用。使用A549肺癌细胞系进行研究。发现ART加大剂量获延长使用时间均能抑制细胞增殖。且ART与CIS联合使用,抑癌效果要显著强于单独用ART获单独用CIS,使用裸鼠进行动物实验也得到了同样结果。并证明,联合效果是通过P38/JNK/ERK MAPK信号通路发挥作用。
IF:2.600Q2 Gene, 2021-1. DOI: 10.1016/j.gene.2020.145134 PMID: 32898605
Abstract:
BACKGROUND: Artesunate (ART) has been used extensively as anti-malarial drugs worldwide. Besides, it has also been reported to have anti-cancer activities. This study was aimed to explore the anti-cancer activity … >>>
BACKGROUND: Artesunate (ART) has been used extensively as anti-malarial drugs worldwide. Besides, it has also been reported to have anti-cancer activities. This study was aimed to explore the anti-cancer activity of ART in combination with cisplatin (CIS) on A549 cells.METHODS: Cells were cultured with different concentrations of ART and/or CIS for 24, 48, or 72 h to test the anti-proliferative effects by CCK-8 assay. Colony formation assay and EdU staining were also performed. TUNEL staining was used to illustrate the morphologic changes. Cell cycle and apoptosis were determined by flow cytometry assay, and Western blot analysis was conducted to detect the expression of apoptosis- and proliferation-related proteins. Caspase activities were determined by colorimetric assay kit. Moreover, the synergistic effect of ART with CIS in A549 cell xenograft model was also determined.RESULTS: ART significantly inhibited cell proliferation in dose- and time-dependent manners. Collectively, the combination treatment remarkably decreased colony formation rates and increased the rates of TUNEL-positive cells compared with mono-treatment. Mechanistically, the combination treatment influenced the expression of Bcl-2, Bax, p-P53, Caspase-3/7, Caspase-9, CyclinB1, P34, P21, and synergistically regulated the activity of P38/JNK/ERK1/2 MAPK pathway. In mice A549 xenograft tumors, the combination strategy significantly increased the anti-cancer efficacy of ART and CIS alone, consistent with the in vitro observations.CONCLUSIONS: ART exhibited significant anti-tumor effect on A549 cells and this efficiency could be enhanced by combination with CIS. <<<
翻译
44.
龙海晨 (2022-04-10 12:28):
#paper Heat Shock Protein Beta 1 is a Prognostic Biomarker and Correlated with Immune Infiltrates in Hepatocellular Carcinoma PMID: 34531676 PMCID: PMC8439715 DOI: 10.2147/IJGM.S330608 推荐理由,最近在尝试自己做生信分析,这是我尝试复现文中生信分析方法的文章,文章使用生信分析和自己做免疫组化验证相结合的方法进行实验。 文章研究目的:研究旨在阐明HSPB1在肝癌中的表达及其潜在的治疗和预后价值。方法:从癌症基因组图谱和基因表达综合数据库中收集了肝癌和正常肝组织中HSPB1表达水平的数据。用免疫组织化学(IHC)对其进行了验证。ROC和Kaplan-Meier 生存曲线研究分析HSPB1在肝癌预后中的作用。生信分析部分包含:RNA-Sequencing Data and Bioinformatics(使用TCGA数据库数据GEO分析,免疫组化实验验证)ROC和Kaplan-Meier 生存曲线分析HSPB1在肝癌患者中的预后。单变量和多变量回归分析,分析HSPB1表达与肝癌生存率之间的相关性。用(STRING) 构建HSPB1的蛋白质相互作用(PPI)网络。HSPB1和HSPB1基因信号通路预测使用Gene Ontology (GO)和Kyoto Encyclopedia of Genes and Genomes (KEGG).用Tumor Immune Estimation Resource (TIMER) 和single sample Gene Set Enrichment Analysis (ssGSEA)分析HSPB1与肿瘤之间的关系。免疫细胞,包括B细胞、中性粒细胞、巨噬细胞、CD4+T细胞和CD8+T细胞。文章结论:HSPB1表达和免疫细胞浸润和肝癌患者预后之间存在显著相关性。HSPB1的表达可能对肝癌患者有明显的预后价值,而且可能是肝癌免疫治疗的潜在靶点。
Abstract:
BACKGROUND: Hepatocellular carcinoma (HCC) is one of the most serious malignancies. The main features of HCC are vascular invasion and drug resistance. Ferroptosis is a novel cell program that is … >>>
BACKGROUND: Hepatocellular carcinoma (HCC) is one of the most serious malignancies. The main features of HCC are vascular invasion and drug resistance. Ferroptosis is a novel cell program that is involved in several diseases, such as cancer. Heat shock protein beta 1 (HSPB1) is a major component of heat shock proteins. A recent study showed that HSPB1 could be a new therapeutic target for colorectal cancer with 5-fluorouracil-acquired resistance. However, the functional role of HSPB1 in HCC remains unclear.AIM: The aim of this study is to clarify HSPB1 expression in HCC and its potential therapeutic and prognostic value.METHODS: We collected data on HSPB1 expression levels in HCC and normal liver tissues from The Cancer Genome Atlas and Gene Expression Omnibus databases. We then validated it using immunohistochemistry (IHC). Receiver operating characteristic and Kaplan-Meier survival curves were used to investigate the role of HSPB1 in the prognosis analysis of HCC. Further, we used the online Search Tool for the Retrieval of Interacting Genes/Proteins website, Gene Ontology, and Kyoto Encyclopedia of Genes and Genomes to conduct enrichment analysis and identify the predictive signaling pathways. Meanwhile, we used the TIMER and GSVA package of R (v3.6.3) to analyze the association between HSPB1 and immunocyte infiltration.RESULTS: Compared to normal tissues, there was differential expression of HSPB1 in pan-cancers. HSPB1 expression was higher in HCC tissues than in normal tissues (p<0.05). There was an evident significant difference between HSPB1 mRNA levels and histologic grade, vascular invasion, and alpha-fetoprotein level (all p values<0.05). Univariate analysis indicated that HCC patients with high HSPB1 levels had shorter overall survival rates than those with low HSPB1 levels (p<0.05). MAPK14, HSPA8, MAPKAPK3, MAPKAPK5, and MAPKAPK2 are essential proteins that interact with HSPB1. There was a significant correlation between HSPB1 expression levels and immune cell infiltration, including CD4+ T cells (r=0.203, p<0.05).CONCLUSION: High HSPB1 expression is closely associated with a worse prognosis in HCC patients, and HSPB1 may be a target of immunotherapy in HCC. <<<
翻译
45.
龙海晨 (2022-03-31 12:25):
#paper doi: 10.1186/s12935-022-02506-0 Cancer Cell International (2022) 22:94 HPV16 E6 gene polymorphisms and the functions of the mutation site in cervical cancer among Uygur ethnic and Han nationality women in Xinjiang, China 三月比较忙,用自己课题组的文献发过来应该也符合要求吧,用生物信息学技术和细胞生物学,分子生物学实验。文章探寻维吾尔族和汉族妇女感染HPV的基因型分布。分析高危型病毒HPV16E6基因多态性位点及其与宫颈癌发生发展的关系。使用欧洲标准原型对HPV16 E6序列进行进化树分析,PV16 E6-T295/T350、G295/G350和T295/G350 GV230载体稳定转染宫颈癌C33A细胞,通过CCK8和克隆形成试验、转移膨胀和细胞划痕试验、流式细胞仪试验分析细胞增殖、迁移和侵袭、凋亡。 研究结果:1. 2879人中HPV总感染率为26.390%(760/2879),维吾尔族为22.87%(196/857),汉族为27.89%(564/2022)(P<0.05)。 2.在110个突变中,65例E6基因在核苷酸350(T350G)处发生突变亮氨酸变成缬氨酸(L83V)。此外,还有7例E6基因在295核苷酸处发生突变(T295G),天冬氨酸转变为谷氨酸(D64E)。 3.当突变位点的E6载体被转染到C33A中时,它们能促进细胞增殖、迁移、侵袭,并抑制细胞凋亡。T295/G350-E6为阳性显著强于G295/G350和T295/T350,G295/G350显著强于T295/T350(P<0.05)。T295/G350对C33A细胞的作用最强,G295/G350明显强于T295/T350(P<0.05)。 结论:1.中国新疆维吾尔族和汉族的HPV阳性感染率不同,感染的基因型分布也不同。 2.用不同的真核表达载体转染C33A细胞后, T295/G350比G295/G350突变位点在更大程度上促进了C33A细胞的增殖、迁移和侵袭,G295/G350比T295/T350有更强的效果。
IF:5.300Q1 Cancer cell international, 2022-Feb-22. DOI: 10.1186/s12935-022-02506-0 PMID: 35193568 PMCID:PMC8862000
Abstract:
BACKGROUND: To investigate the genotype distribution of human papillomavirus (HPV) in infected Uygur and Han women in Xinjiang, China; analyze the HPV16 E6 gene polymorphism site and relationship with the … >>>
BACKGROUND: To investigate the genotype distribution of human papillomavirus (HPV) in infected Uygur and Han women in Xinjiang, China; analyze the HPV16 E6 gene polymorphism site and relationship with the development of cervical cancer.METHODS: The HPV16 E6 sequence was analyzed using the European standard prototype to perform an evolutionary tree. HPV16 E6-T295/T350, G295/G350, and T295/G350 GV230 vectors were stably transfected into cervical cancer C33A cells to analyze the cell proliferation, migration and invasion, apoptosis by CCK8 and clonogenic assays, transwell and cell scratch assays, FACS experiments.RESULTS: The total HPV infection rate was 26.390% (760/2879), whereas the Uygur 22.87% (196/857) and the Han was 27.89% (564/2022) (P < 0.05). Among 110 mutations, 65 cases of E6 genes were mutated at nucleotide 350 (T350G) with the leucine changing to valine (L83V). Moreover, there were 7 cases of E6 gene mutated at nucleotide 295 (T295G) with aspartic changing to glutamic (D64E). When E6 vector(s) of mutations sites were transfected into C33A cells, they were found to promote cellular proliferation, migration, invasion, and inhibit apoptosis. T295/G350-E6 was significantly stronger than G295/G350 and T295/T350, G295/G350 was significantly stronger than T295/T350 (P < 0.05). The T295/G350 had the strongest effect on C33A cells and G295/G350 was significantly stronger than T295/T350 (P < 0.05).CONCLUSIONS: The positive HPV infection rates differed between the Uygur and Han in Xinjiang, China, and the genotype distribution of infection was different. After transfecting C33A cells with different eukaryotic expression vectors, the T295/G350 mutation site promoted the proliferation, migration, and invasion of C33A cells to a greater extent than G295/G350; however, G295/G350 had a stronger effect than T295/T350. <<<
翻译
46.
龙海晨 (2022-02-16 00:55):
#paper doi:10.1126/science.aah5869 Science, 2016, Generation of influenza A viruses as live but replication-incompetent virus vaccines 。推荐理由。”通过反向遗传学设计研制甲型流感病毒疫苗的论文。研究解决的问题: 1.可以快速大量生产活病毒疫苗(RNA) 2.信使RNA中引入了一个终止密码子让病毒失去复制能力(与之前的方法相比便宜高效) 3.插入位置在保守区,病毒若通过突变的形式恢复制能力会直接死亡 4.技术的核心:拥有用于病毒恢复复制能力的细胞系用于生产病毒,作为疫苗。病毒离开专门细胞系后丧失复制能力。 5.意外的收获:可以当治疗药物使用。新的病毒和野生型结合会使野生型病毒消失。(之前的技术常发生:活疫苗病毒与野生病毒相遇结果活疫苗产生毒性)。通过在(甲型)流感病毒的信使RNA中引入了一个终止密码子,并保留病毒的完整结构。这样,保留了感染性的病毒进入人体后,可以激活人体细胞的全部免疫反应,但由于终止密码子的存在,病毒无法进行蛋白质翻译,因而失去复制能力。
Science (New York, N.Y.), 2016-12-02. PMID: 27934767
Abstract:
The conversion of life-threatening viruses into live but avirulent vaccines represents a revolution in vaccinology. In a proof-of-principle study, we expanded the genetic code of the genome of influenza A … >>>
The conversion of life-threatening viruses into live but avirulent vaccines represents a revolution in vaccinology. In a proof-of-principle study, we expanded the genetic code of the genome of influenza A virus via a transgenic cell line containing orthogonal translation machinery. This generated premature termination codon (PTC)-harboring viruses that exerted full infectivity but were replication-incompetent in conventional cells. Genome-wide optimization of the sites for incorporation of multiple PTCs resulted in highly reproductive and genetically stable progeny viruses in transgenic cells. In mouse, ferret, and guinea pig models, vaccination with PTC viruses elicited robust humoral, mucosal, and T cell-mediated immunity against antigenically distinct influenza viruses and even neutralized existing infecting strains. The methods presented here may become a general approach for generating live virus vaccines that can be adapted to almost any virus. <<<
翻译
回到顶部