当前共找到 3 篇文献分享。
1.
颜林林 (2023-02-27 21:12):
#paper doi:10.3390/ijms24043588 International Journal of Molecular Sciences, 2023, A DNA Finite-State Machine Based on the Programmable Allosteric Strategy of DNAzyme. 本研究利用核酶(一种具有特定序列和构象的DNA分子,本身具有切割特定核酸片段的催化能力)的特性,构建了一个具有不同状态的纳米机器体系,通过加入不同的核酸分子(作为输入),使体系中发生链置换反应,从而使人工设计的核酶分子,可逆地改变为不同状态,并通过切割报告核酸分子输出荧光信号进行确认,从实验上验证了用DNA分子实现有限状态机的可行性。除了实时监测反应体系的荧光信号外,本研究也通过电泳对体系中存在的各个核酸分子进行了确认。本研究分别实现了两状态和五状态的有限状态机,从概念上验证了,可以通过增加不同序列的核酸分子,实现状态机的状态数量扩展,可据此进一步研发更复杂的DNA纳米分子机器。
Abstract:
Living organisms can produce corresponding functions by responding to external and internal stimuli, and this irritability plays a pivotal role in nature. Inspired by such natural temporal responses, the development … >>>
Living organisms can produce corresponding functions by responding to external and internal stimuli, and this irritability plays a pivotal role in nature. Inspired by such natural temporal responses, the development and design of nanodevices with the ability to process time-related information could facilitate the development of molecular information processing systems. Here, we proposed a DNA finite-state machine that can dynamically respond to sequential stimuli signals. To build this state machine, a programmable allosteric strategy of DNAzyme was developed. This strategy performs the programmable control of DNAzyme conformation using a reconfigurable DNA hairpin. Based on this strategy, we first implemented a finite-state machine with two states. Through the modular design of the strategy, we further realized the finite-state machine with five states. The DNA finite-state machine endows molecular information systems with the ability of reversible logic control and order detection, which can be extended to more complex DNA computing and nanomachines to promote the development of dynamic nanotechnology. <<<
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2.
颜林林 (2022-07-15 00:05):
#paper doi:10.3390/ijms23137446 International Journal of Molecular Sciences, 2022, Identification of Spliceogenic Variants beyond Canonical GT-AG Splice Sites in Hereditary Cancer Genes. 位于外显子边界附近的点突变,可能会影响基因表达的剪接形式,这在遗传病诊断和咨询过程中,是重要的信息。然而,大多数情况下,这类突变只能通过既往报道和计算工具预测来进行判定,而在美国医学遗传学和基因组学学会和分子病理学协会(ACMG/AMP)变异分类指南中,计算方法得到的结果,通常只能作为意义不确定的突变(VUS)。本文研究纳入了732例携带此类潜在可能影响RNA剪接的VUS突变的患者,涉及APC、ATM、FH、LZTR1、MSH6、PALB2、RAD51C和TP53基因,采用多重PCR方法,在RNA水平上进行了检测,以验证这些VUS所造成的影响。对于检测结果,本文逐一进行了生物学功能的分析与解读,以确定相应突变是否致病。最终对50%的VUS突变重新进行了分类,25%降级成为可能良性,25%升级成为可能致病。
Abstract:
Pathogenic/likely pathogenic variants in susceptibility genes that interrupt RNA splicing are a well-documented mechanism of hereditary cancer syndromes development. However, if RNA studies are not performed, most of the variants … >>>
Pathogenic/likely pathogenic variants in susceptibility genes that interrupt RNA splicing are a well-documented mechanism of hereditary cancer syndromes development. However, if RNA studies are not performed, most of the variants beyond the canonical GT-AG splice site are characterized as variants of uncertain significance (VUS). To decrease the VUS burden, we have bioinformatically evaluated all novel VUS detected in 732 consecutive patients tested in the routine genetic counseling process. Twelve VUS that were predicted to cause splicing defects were selected for mRNA analysis. Here, we report a functional characterization of 12 variants located beyond the first two intronic nucleotides using RNAseq in , , , , , , , and genes. Based on the analysis of mRNA, we have successfully reclassified 50% of investigated variants. 25% of variants were downgraded to likely benign, whereas 25% were upgraded to likely pathogenic leading to improved clinical management of the patient and the family members. <<<
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3.
Marvel (2022-03-31 20:46):
#paper Challenges of CRISPR-Based Gene Editing in Primary T Cells doi: 10.3390/ijms23031689 Link# https://www.mdpi.com/1422-0067/23/3/1689 过继性细胞疗法在白血病以及某些类型癌症的成功治疗中取得了很大希望,近来其也在免疫抑制患者的慢性病毒感染中显示出疗效。而这些自体或异体的T细胞往往要经过基因修饰以表达新的TCR或CAR,在此过程中无可避免或多或少要用到CRISPR/Cas系统,以达到基因组上特定位点的增删。此篇综述中,研究者总结了对这些基因修饰比较重要的方法学突破,操作中需要考虑的关键点,并强调了这些方法的潜在缺陷。 文章总结了1. CRISPR/Cas系统的起源、结构以及基因组编辑的分子机制 2. CRISPR/Cas系统进行T细胞基因编辑应用流程及各环节的注意事项 ( T细胞的培养与活化、gRNA的选择<设计与脱靶检测>、RNP形式的选择) 3. 递送方式的选择与优劣 4. 系统引起的非同源末端链接导致DSB修复。 文章同时总结了截至到2021.12.31基于CRISPR基因编辑T细胞的临床试验,统计了其编辑靶点、适应症与临床分期。其他包括基于Cas9敲入的注意事项包括gRNA和HDR的设计与选择等等。 总的来说,这篇文章与其说是综述,更像是综述的综述。对于细分领域的研发人员来讲,真的是一篇不可多的的好文章!
Abstract:
Adaptive T-cell immunotherapy holds great promise for the successful treatment of leukemia, as well as other types of cancers. More recently, it was also shown to be an effective treatment … >>>
Adaptive T-cell immunotherapy holds great promise for the successful treatment of leukemia, as well as other types of cancers. More recently, it was also shown to be an effective treatment option for chronic virus infections in immunosuppressed patients. Autologous or allogeneic T cells used for immunotherapy are usually genetically modified to express novel T-cell or chimeric antigen receptors. The production of such cells was significantly simplified with the CRISPR/Cas system, allowing for the deletion or insertion of novel genes at specific locations within the genome. In this review, we describe recent methodological breakthroughs that were important for the conduction of these genetic modifications, summarize crucial points to be considered when conducting such experiments, and highlight the potential pitfalls of these approaches. <<<
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