小W (2022-08-31 22:43):
#paper doi:Shilts, J., Severin, Y., Galaway, F. et al. A physical wiring diagram for the human immune system. Nature 608, 397–404 (2022). https://doi.org/10.1038/s41586-022-05028-x 这篇论文的亮点是开发了一种能够高效和高通量筛选重组细胞外结构域之间的蛋白质结合相互作用的方法(SAVEXIS),结合其他多组学数据系统注释了免疫细胞的物理相互作用的关系图谱。其内容包括:1.组装( 630 种)了一个包含在先前对外周免疫细胞研究中检测到的细胞表面蛋白质的完整胞外域,以及兼容的所有 CD 编号蛋白质文库,使用 SAVEXIS 方法 得到 187 种蛋白质的相互作用矩阵(低于万分之一的误报率独立捕获了所有先前报告的交互作用,确定了 28 个新的相互作用)。2.表面等离子体共振(SPR) 数据和ELISA四聚化测量结合亲和力,单细胞表达数据集检测到体和配体对的表达位置,结合蛋白质组学数据,建模每种血液免疫细胞的细胞结合动力学的数学模型,并基于质量作用定律的微分方程系统进行扰动预测。3.提供了网页端的数据接口,具体数据集未开放。
IF:50.500Q1 Nature, 2022. DOI: 10.1038/s41586-022-05028-x
A physical wiring diagram for the human immune system
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Abstract:
The human immune system is composed of a distributed network of cells circulating throughout the body, which must dynamically form physical associations and communicate using interactions between their cell-surface proteomes1. Despite their therapeutic potential2, our map of these surface interactions remains incomplete3,4. Here, using a high-throughput surface receptor screening method, we systematically mapped the direct protein interactions across a recombinant library that encompasses most of the surface proteins that are detectable on human leukocytes. We independently validated and determined the biophysical parameters of each novel interaction, resulting in a high-confidence and quantitative view of the receptor wiring that connects human immune cells. By integrating our interactome with expression data, we identified trends in the dynamics of immune interactions and constructed a reductionist mathematical model that predicts cellular connectivity from basic principles. We also developed an interactive multi-tissue single-cell atlas that infers immune interactions throughout the body, revealing potential functional contexts for new interactions and hubs in multicellular networks. Finally, we combined targeted protein stimulation of human leukocytes with multiplex high-content microscopy to link our receptor interactions to functional roles, in terms of both modulating immune responses and maintaining normal patterns of intercellular associations. Together, our work provides a systematic perspective on the intercellular wiring of the human immune system that extends from systems-level principles of immune cell connectivity down to mechanistic characterization of individual receptors, which could offer opportunities for therapeutic intervention.
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