哪有情可长 (2024-08-31 22:00):
#paper Convergent selection of a WD40 protein that enhances grain yield in maize and rice DOI: 10.1126/science.abg798. 文章对玉米和水稻中控制籽粒行数的基因发现趋同进化。首先在玉米中利用RIL群体鉴定到了一个关于穗行数的基因,图位克隆发现一个KRN2基因,验证分子机理后。后续又在水稻同源鉴定该及验证该基因能够控制水稻的分支数。研究人员在多种环境中种植玉米KRN2和水稻OsKRN2基因敲除系进行产量测试。经过三种环境的田间试验表明,玉米和水稻的KRN2基因敲除系KRN增加使得产量增加,其他农艺性状没有明显改变。这些发现表明,KRN2/OsKRN2等位基因完全丧失功能可提高粮食产量,但对试验环境中其他农艺性状没有明显的负面影响。最后在水稻和玉米的全基因组上鉴定这些同源进化的基因,发现玉米和水稻中都经历了趋同选择的同源基因对,不同类型的淀粉合成相关酶功能高度保守,尽管它们在玉米和水稻中的拷贝数和同工酶数量不同。这些发现表明,一些同源基因在相同的代谢或调控途径中起作用,但它们在不同作物中的选择路径可能不同。通过趋同选择实现的遗传趋同程度与给定选择的基因网络的保守性和复杂性有关。
Science, 2022-3-25. DOI: 10.1126/science.abg7985
Convergent selection of a WD40 protein that enhances grain yield in maize and rice
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Abstract:
A better understanding of the extent of convergent selection among crops could greatly improve breeding programs. We found that the quantitative trait locus KRN2 in maize and its rice ortholog, OsKRN2 , experienced convergent selection. These orthologs encode WD40 proteins and interact with a gene of unknown function, DUF1644, to negatively regulate grain number in both crops. Knockout of KRN2 in maize or OsKRN2 in rice increased grain yield by ~10% and ~8%, respectively, with no apparent trade-offs in other agronomic traits. Furthermore, genome-wide scans identified 490 pairs of orthologous genes that underwent convergent selection during maize and rice evolution, and these were enriched for two shared molecular pathways. KRN2 , together with other convergently selected genes, provides an excellent target for future crop improvement.
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