Jarvi Coa (2023-12-28 11:25):
#paper doi:10.1021/jacs.2c04325,JACS,2022,DNA Strand-Displacement Temporal Logic Circuits 这篇文章通过时间记忆的策略,结合DNA电路链置换反应,实现逻辑与门,用n个输入可以得到附带时序信息的n!个组合,对比传统电路只能得到n个输出结果的电路,很大程度提高了可拓展性,并在研究过程中发现改进门中杂交链的错配可用于降低电路设计的复杂性,缩短特定的立足点可用于提高电路行为的鲁棒性。为以后在更复杂的DNA计算提供了可能,该作者也正在研发此此类电路与神经网路和机器学习结合的新方法。
DNA Strand-Displacement Temporal Logic Circuits
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Abstract:
Molecular circuits capable of processing temporal information are essential for complex decision making in response to both the presence and history of a molecular environment. A particular type of temporal information that has been recognized to be important is the relative timing of signals. Here we demonstrate the strategy of temporal memory combined with logic computation in DNA strand-displacement circuits capable of making decisions based on specific combinations of inputs as well as their relative timing. The circuit encodes the timing information on inputs in a set of memory strands, which allows for the construction of logic gates that act on current and historical signals. We show that mismatches can be employed to reduce the complexity of circuit design and that shortening specific toeholds can be useful for improving the robustness of circuit behavior. We also show that a detailed model can provide critical insights for guiding certain aspects of experimental investigations that an abstract model cannot. We envision that the design principles explored in this study can be generalized to more complex temporal logic circuits and incorporated into other types of circuit architectures, including DNA-based neural networks, enabling the implementation of timing-dependent learning rules and opening up new opportunities for embedding intelligent behaviors into artificial molecular machines.
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