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周周复始 (2023-02-28 17:22):
#paper DOI: 10.1007/978-3-030-87735-4_21 CAS-Net: Conditional Atlas Generation and Brain Segmentation for Fetal MRI. 为了解决图像伪影和噪声以及训练标签不精确的问题,提出了一种新的架构,在一个端到端的pipeline中同时学习分割和生成条件图谱,同时基于微分同胚配准来保证图谱生成的平滑性和连续性 。该图谱使模型能够在不依赖于输入图像的强度值的情况下学习解剖先验,并提高分割性能,特别是在图像质量差没有金标准训练标签的情况下。用该方法在dHCP的253个被试上进行了训练和评估,结果表明,可以生成具有明显边界的特定年龄条件图谱。
Abstract:
Fetal Magnetic Resonance Imaging (MRI) is used in prenatal diagnosis and to assess early brain development. Accurate segmentation of the different brain tissues is a vital step in several brain … >>>
Fetal Magnetic Resonance Imaging (MRI) is used in prenatal diagnosis and to assess early brain development. Accurate segmentation of the different brain tissues is a vital step in several brain analysis tasks, such as cortical surface reconstruction and tissue thickness measurements. Fetal MRI scans, however, are prone to motion artifacts that can affect the correctness of both manual and automatic segmentation techniques. In this paper, we propose a novel network structure that can simultaneously generate conditional atlases and predict brain tissue segmentation, called CAS-Net. The conditional atlases provide anatomical priors that can constrain the segmentation connectivity, despite the heterogeneity of intensity values caused by motion or partial volume effects. The proposed method is trained and evaluated on 253 subjects from the developing Human Connectome Project (dHCP). The results demonstrate that the proposed method can generate conditional age-specific atlas with sharp boundary and shape variance. It also segment multi-category brain tissues for fetal MRI with a high overall Dice similarity coefficient (DSC) of 85.2% for the selected 9 tissue labels. <<<
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