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白鸟
(2024-04-30 09:13):
#paper doi:10.1016/j.phrs.2023.106800,Single-cell RNA-sequencing data reveals the genetic source of extracellular vesicles in esophageal squamous cell carcinoma, 2023.3. 分析恶性和非恶性食管组织中EV的遗传起源,揭示ESCC中细胞间相互作用;
文章策略:单细胞测序+外泌体RNA测序;
(1) 实验样本:6名ESCC患者同时进行单细胞测序,和提取不同细胞上清液,检测囊泡mRNA检测;
(2) 分析恶性和非恶性食管组织中EV的遗传起源,揭示ESCC中细胞间相互作用;
(3) 外泌体RNA测序-->揭示EV表达差异:恶性和非恶性食管组织中EV的基因表达存在差异;
(4) 单细胞测序-->精确识别EV的细胞起源:恶性组织主要是上皮细胞分泌EV,非恶性组织主要是内皮细胞和成纤维细胞分泌EV;
Abstract:
Esophageal squamous cell carcinoma (ESCC) is invasive cancer and the complex mechanisms underlying carcinogenesis remain unclear. Extracellular vesicles (EVs), secreted by most cell types, serve as a critical factor in …
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Esophageal squamous cell carcinoma (ESCC) is invasive cancer and the complex mechanisms underlying carcinogenesis remain unclear. Extracellular vesicles (EVs), secreted by most cell types, serve as a critical factor in tumorigenesis via intercellular communications. Our study aims to investigate the cellular origin of EVs in ESCC, and unveil the unknown molecular and cellular mechanisms underlying cell-cell communications. Six ESCC patients were enrolled and single-cell RNA sequencing (scRNA-seq) analyses were conducted to screen different cell subpopulations. The genetic origin of EVs was tracked using the supernatant from different cellular extracts. Nanoparticle tracking analysis (NTA), western blot analysis, and transmission electron microscopy (TEM) were performed for validation. Using scRNA-seq analysis, eleven cell subpopulations were identified in ESCC. Differences in gene expression in EVs between malignant and non-malignant esophageal tissues were found. Our findings demonstrated that epithelial cells releasing EVs were the most prevalent in malignant tissues, while endothelial cells and fibroblasts releasing EVs were predominant in non-malignant tissues. Furthermore, the high levels of gene expression in EVs released from these cells were correlated significantly with a worse prognosis. Our findings revealed the genetic origin of EVs in malignant and non-malignant esophageal tissues and provided a comprehensive overview of the associated cell-cell interactions in ESCC.
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