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(2023-02-28 23:46):
#与海底硫循环有关的新酸杆菌类群Novel taxa of Acidobacteriota implicated in seafloor sulfur cycling
The ISME Journal (2021) 15:3159–3180
https://doi.org/10.1038/s41396-021-00992-0 酸杆菌广泛存在于海洋沉积物中,但其代谢和生态特性尚不清楚。在这里,我们通过宏基因组组装基因组(MAGs)的功能预测,16S rRNA和异源亚硫酸盐还原酶(dsrB)基因和转录物的扩增子测序,以及四硫酸盐修饰的基因表达分析,研究了斯瓦尔巴群岛海洋沉积物中酸杆菌的代谢和分布。在斯瓦尔巴群岛沉积物中,酸杆菌属是仅次于脱硫杆菌属的第二大含有亚硫酸盐还原酶dsrB的门(平均13%),平均占亚硫酸盐还原酶dsrB转录物的4%。对亚硫酸盐还原酶dsrAB数据集的荟萃分析还显示,酸杆菌的亚硫酸盐还原酶dsrAB序列在全球海洋沉积物中非常突出,平均占所有分析序列的15%,并代表了海洋沉积物中大部分以前未分类的亚硫酸盐还原酶dsrAB。我们提出了两个新的酸杆菌属,Candidatus sulomarinibacter(类Thermoanaerobaculia,“细分23”)和Ca. Polarisedimenticola(“细分22”),它们具有独特的遗传特性,可以解释它们在生物地球化学特征不同的沉积物中的分布。Ca. sulomarinibacter编码灵活的呼吸途径,具有潜在的氧、氧化亚氮、金属氧化物、四硫酸盐、硫和亚硫酸盐/硫酸盐呼吸,并可能发生硫歧化。潜在的营养物质和能量包括纤维素、蛋白质、蓝藻素、氢和醋酸酯。A Ca. Polarisedimenticola MAG编码各种酶来降解蛋白质,并减少氧气,硝酸盐,硫/多硫化物和金属氧化物。Svalbard沉积物的16S rRNA基因和转录谱分析显示,Ca. sulomarinibacter成员在硫化物峡湾沉积物中相对丰富且具有转录活性,而Ca. Polarisedimenticola成员在富金属峡湾沉积物中相对丰富。总的来说,我们揭示了未经培养的海洋酸杆菌的各种生理特征,以及在海底生物地球化学循环中的基本作用。
Novel taxa of Acidobacteriota implicated in seafloor sulfur cycling
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Abstract:
Acidobacteriota are widespread and often abundant in marine sediments, yet their metabolic and ecological properties are poorly understood. Here, we examined metabolisms and distributions of Acidobacteriota in marine sediments of Svalbard by functional predictions from metagenome-assembled genomes (MAGs), amplicon sequencing of 16S rRNA and dissimilatory sulfite reductase (dsrB) genes and transcripts, and gene expression analyses of tetrathionate-amended microcosms. Acidobacteriota were the second most abundant dsrB-harboring (averaging 13%) phylum after Desulfobacterota in Svalbard sediments, and represented 4% of dsrB transcripts on average. Meta-analysis of dsrAB datasets also showed Acidobacteriota dsrAB sequences are prominent in marine sediments worldwide, averaging 15% of all sequences analysed, and represent most of the previously unclassified dsrAB in marine sediments. We propose two new Acidobacteriota genera, Candidatus Sulfomarinibacter (class Thermoanaerobaculia, "subdivision 23") and Ca. Polarisedimenticola ("subdivision 22"), with distinct genetic properties that may explain their distributions in biogeochemically distinct sediments. Ca. Sulfomarinibacter encode flexible respiratory routes, with potential for oxygen, nitrous oxide, metal-oxide, tetrathionate, sulfur and sulfite/sulfate respiration, and possibly sulfur disproportionation. Potential nutrients and energy include cellulose, proteins, cyanophycin, hydrogen, and acetate. A Ca. Polarisedimenticola MAG encodes various enzymes to degrade proteins, and to reduce oxygen, nitrate, sulfur/polysulfide and metal-oxides. 16S rRNA gene and transcript profiling of Svalbard sediments showed Ca. Sulfomarinibacter members were relatively abundant and transcriptionally active in sulfidic fjord sediments, while Ca. Polarisedimenticola members were more relatively abundant in metal-rich fjord sediments. Overall, we reveal various physiological features of uncultured marine Acidobacteriota that indicate fundamental roles in seafloor biogeochemical cycling.
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