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2022, Cell. DOI: 10.1016/j.cell.2022.11.016
Engineered cell entry links receptor biology with single-cell genomics
Bingfei Yu , Quanming Shi , Julia A. Belk , Kathryn E. Yost , Kevin R. Parker , Rui Li , Betty B. Liu , Huang Huang , Daniel Lingwood , William J. Greenleaf , Mark M. Davis , Ansuman T. Satpathy , Howard Y. Chang
Abstract:
Cells communicate with each other via receptor-ligand interactions. Here, we describe lentiviral-mediated cell entry by engineered receptor-ligand interaction (ENTER) to display ligand proteins, deliver payloads, and record receptor specificity. We optimize ENTER to decode interactions between T cell receptor (TCR)-MHC peptides, antibody-antigen, and other receptor-ligand pairs. A viral presentation strategy allows ENTER to capture interactions between B cell receptor and any antigen. We engineer ENTER to deliver genetic payloads to antigen-specific T or B cells to selectively modulate cellular behavior in mixed populations. Single-cell readout of ENTER by RNA sequencing (ENTER-seq) enables multiplexed enumeration of antigen specificities, TCR clonality, cell type, and states of individual T cells. ENTER-seq of CMV-seropositive patient blood samples reveals the viral epitopes that drive effector memory T cell differentiation and inter-clonal vs. intra-clonal phenotypic diversity targeting the same epitope. ENTER technology enables systematic discovery of receptor specificity, linkage to cell fates, and antigen-specific cargo delivery.
2023-01-01 00:00:00
#paper doi: 10.1016/j.cell.2022.11.016. Epub 2022 Dec 13. Engineered cell entry links receptor biology with single-cell genomics 1.本文开发了一个模块化病毒展示和递送平台(ENTER),通过向靶细胞中递送配体,以解码细胞间配体-受体相互作用,并将配体-受体的相互作用与细胞状态联系起来,可以系统地对TCR-pMHC、抗体抗原、共刺激配体受体和BCR在内的相互作用进行展示。pMHC结果显示该病毒递送平台比mhc四聚体检测抗原特异性T细胞更敏感,在添加高滴度病毒(40 ng p24)时,ENTER能够检测到低至10.8 mM的TCR亲和力。ENTER能够通过抗原特异性递送自杀基因在T或B细胞池中选择性地耗尽一个T或B淋巴细胞克隆,或递送对抗细胞死亡受体使抗原特异性T细胞选择性存活,其可能在筛选免疫原性抗原或精英TCR,用于疫苗开发或癌症免疫治疗的合理设计;筛选靶向病毒抗原的BCR,促进治疗性抗体的开发;恢复耗竭的抗肿瘤T细;避免免疫相关的不良事件;杀死自身反应性T细胞或B细胞以治疗自身免疫疾病等方向发挥作用。2.ENTER平台与单细胞RNA-seq结合开发了ENTER-seq,捕获每个液滴中病毒RNA上的MHC肽信息,绘制TCR库和同源HLA抗原肽的相互作用。
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