来自杂志 Frontiers in immunology 的文献。
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1.
白鸟 (2023-06-30 22:26):
#paper https://www.frontiersin.org/articles/10.3389/fimmu.2023.1147718/full. The immunomodulatory mechanisms for acupuncture practice. 缘起:昨天跟同事聊起,他得了一种比较奇怪的病-面肌炎,跟自身免疫疾病有关,医生给他开了抗病毒的药物,特别提到对不同的穴位用针灸进行治疗。我一直也觉得中医和免疫系统应该是想通的,需要科学的解释。所以,想找一篇针灸和免疫相关的文献看看。 文献中,提到针灸是一种安全有效的调节人体免疫系统的医疗实践。需要针灸基于与现代西医不同的系统,因此当前的研究重点是针灸的作用和相关的神经生物学机制。本文对针灸的免疫调节机制进行综述,系统整合现有研究成果,阐明针灸对先天性和适应性免疫反应的调节作用,以及针灸免疫调节神经解剖学机制,包括完整的自主反射途径。这对于针灸医学的普及具有重要意义。 比较惭愧的是,文章我还没细读。最近在读免疫书,希望能加深一些人体免疫系统如何具体运行的理解。
Abstract:
The system physiology approaches that emerge in western countries in recent years echo the holistic view of ancient Traditional Chinese Medicine (TCM) practices that deal with the root, rather than … >>>
The system physiology approaches that emerge in western countries in recent years echo the holistic view of ancient Traditional Chinese Medicine (TCM) practices that deal with the root, rather than only the symptoms of diseases. Particularly, TCM practices, including acupuncture, emphasize the mobilization of self-healing mechanisms to bring back body homeostasis. Acupuncture has been practiced for over two thousand years to modulate body physiology stimulation at specific body regions (acupoints). With the development of various research on acupuncture therapy, its regulatory effect on the immune system has been gradually recognized, especially on immunological diseases, including infectious and allergic diseases. In this study, we reviewed the immunomodulatory mechanism of acupuncture and systematically integrates existing research to respectively elucidate the modulatory mechanisms of acupuncture on the innate immune system, adaptive immune system, and well-known neuroanatomical mechanisms, including intact somatosensory-autonomic reflex pathway. With the advances made in recent systems physiology studies, we now have a great opportunity to gain insight into how acupuncture modulates immunity, and subsequently improves its efficacy. <<<
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2.
小年 (2022-09-30 20:36):
#paper doi: 10.3389/fimmu.2021.687975. eCollection 2021. IOBR: Multi-Omics Immuno-Oncology Biological Research to Decode Tumor Microenvironment and Signatures. Front Immunol. 2021. 随着当前免疫疗法和大数据时代的发展,在复杂的多组学数据集中识别新的生物标志物和筛选特征以指导调整治疗策略已成为免疫肿瘤学的焦点。 这篇文章中开发的IOBR包,旨在一站式完成肿瘤多组学数据的免疫学研究,揭示肿瘤微环境和临床特征的关系。包括四个主要的分析模块:特征和TME反卷积模块(the signature and TME deconvolution module)、表型模块(the phenotype module)、突变模块(the mutation module)和模型构建模块(the model construction module),可以有效和系统地分析肿瘤免疫学、临床、基因组学和scRNA-seq数据。集成了8种已发表的用于定量肿瘤微环境(TME)的算法: CIBERSORT, TIMER, xCell, MCPcounter, ESITMATE, EPIC, IPS, quanTIseq,值得注意的是,IOBR收集并使用多种方法进行变量转换、生存分析、特征选择和统计分析,并且支持批量分析和相应结果的可视化。总体而言,基因组和转录组学数据的整合可能会更新和加深我们对肿瘤进展的理解,并通过联合考虑基因组、代谢和TME谱之间的串扰来提供治疗见解。
Abstract:
Recent advances in next-generation sequencing (NGS) technologies have triggered the rapid accumulation of publicly available multi-omics datasets. The application of integrated omics to explore robust signatures for clinical translation is … >>>
Recent advances in next-generation sequencing (NGS) technologies have triggered the rapid accumulation of publicly available multi-omics datasets. The application of integrated omics to explore robust signatures for clinical translation is increasingly emphasized, and this is attributed to the clinical success of immune checkpoint blockades in diverse malignancies. However, effective tools for comprehensively interpreting multi-omics data are still warranted to provide increased granularity into the intrinsic mechanism of oncogenesis and immunotherapeutic sensitivity. Therefore, we developed a computational tool for effective Immuno-Oncology Biological Research (IOBR), providing a comprehensive investigation of the estimation of reported or user-built signatures, TME deconvolution, and signature construction based on multi-omics data. Notably, IOBR offers batch analyses of these signatures and their correlations with clinical phenotypes, long non-coding RNA (lncRNA) profiling, genomic characteristics, and signatures generated from single-cell RNA sequencing (scRNA-seq) data in different cancer settings. Additionally, IOBR integrates multiple existing microenvironmental deconvolution methodologies and signature construction tools for convenient comparison and selection. Collectively, IOBR is a user-friendly tool for leveraging multi-omics data to facilitate immuno-oncology exploration and to unveil tumor-immune interactions and accelerating precision immunotherapy. <<<
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